PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2051-2100 / 86044 show all
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.4963
97.0192
95.9791
41.7450
1764154217783745376
50.4698
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50het
95.7432
96.5626
94.9376
45.0963
1104039311177596251
42.1141
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.8222
97.8503
97.7942
34.8099
66001456606149125
83.8926
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200*
62.2688
72.0280
54.8387
90.2559
103401199835
35.7143
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200het
58.1498
70.5882
49.4382
90.1657
7230889030
33.3333
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
77.5000
75.6098
79.4872
90.6475
31103185
62.5000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50*
97.2834
97.2128
97.3541
36.0909
71502057175195109
55.8974
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50het
96.8834
96.9671
96.7998
38.7932
4476140450714976
51.0067
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
97.9828
97.6625
98.3051
30.8535
26746426684633
71.7391
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_51to200*
62.2222
66.6667
58.3333
94.7368
63753
60.0000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_51to200het
65.2174
71.4286
60.0000
94.8454
52642
50.0000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
50.0000
50.0000
50.0000
94.1176
11111
100.0000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*map_l100_m0_e0*
81.2078
85.4511
77.3660
74.7301
2806347782774581172172
26.7587
anovak-vgSNP*map_l100_m0_e0het
78.3081
89.0262
69.8934
77.2580
1887823271869380522114
26.2543
anovak-vgSNP*map_l100_m0_e0hetalt
0.0000
37.5000
0.0000
0.0000
610000
anovak-vgSNP*map_l100_m0_e0homalt
87.9850
78.9931
99.2870
62.5031
9179244190526558
89.2308
anovak-vgSNP*map_l100_m1_e0*
84.0947
88.8016
79.8617
69.2688
64295810863514160163537
22.0842
anovak-vgSNP*map_l100_m1_e0het
80.4155
91.0315
72.0169
72.1565
41291406840830158653407
21.4749
anovak-vgSNP*map_l100_m1_e0hetalt
0.0000
29.2683
0.0000
0.0000
1229000
anovak-vgSNP*map_l100_m1_e0homalt
91.6965
85.1461
99.3387
58.6113
22992401122684151130
86.0927
anovak-vgSNP*map_l100_m2_e0*
84.2603
88.9000
80.0809
71.0026
65754821064960161583566
22.0696
anovak-vgSNP*map_l100_m2_e0het
80.6158
91.0795
72.3085
73.6388
42260413941790160043433
21.4509
anovak-vgSNP*map_l100_m2_e0hetalt
0.0000
30.9524
0.0000
0.0000
1329000
anovak-vgSNP*map_l100_m2_e0homalt
91.7943
85.3141
99.3397
61.4498
23481404223170154133
86.3636
anovak-vgSNP*map_l100_m2_e1*
84.3316
88.9439
80.1741
71.0026
66474826365661162373582
22.0607
anovak-vgSNP*map_l100_m2_e1het
80.7046
91.1126
72.4307
73.6475
42730416842251160823449
21.4463
anovak-vgSNP*map_l100_m2_e1hetalt
0.0000
30.2326
0.0000
0.0000
1330000
anovak-vgSNP*map_l100_m2_e1homalt
91.8309
85.3756
99.3422
61.4163
23731406523410155133
85.8065
anovak-vgSNP*map_l125_m0_e0*
79.0837
83.3789
75.2094
80.8664
1616332221598252681460
27.7145
anovak-vgSNP*map_l125_m0_e0het
76.4858
87.7448
67.7876
82.7028
1111215521100652301427
27.2849
anovak-vgSNP*map_l125_m0_e0hetalt
0.0000
44.4444
0.0000
0.0000
45000
anovak-vgSNP*map_l125_m0_e0homalt
85.5602
75.1937
99.2421
70.8421
5047166549763833
86.8421
anovak-vgSNP*map_l125_m1_e0*
81.0489
87.0673
75.8087
74.5245
39465586239018124512766
22.2151
anovak-vgSNP*map_l125_m1_e0het
77.1793
90.4691
67.2939
76.7918
25686270625425123572688
21.7529
anovak-vgSNP*map_l125_m1_e0hetalt
0.0000
30.0000
0.0000
0.0000
921000
anovak-vgSNP*map_l125_m1_e0homalt
89.5021
81.4552
99.3132
65.1171
137703135135939478
82.9787