PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-50 / 86044 show all
anovak-vgINDEL***
70.4960
69.7491
71.2591
54.1876
24031510422724860610027081436
81.2167
anovak-vgINDEL**het
69.4961
61.0200
80.7068
58.0873
118460756731311723135716629
53.0312
anovak-vgINDEL**hetalt
0.0000
25.9341
0.0000
0.0000
654518692000
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
anovak-vgINDEL*HG002complexvar*
72.8155
71.0364
74.6860
53.4026
5465422284560691900416560
87.1395
anovak-vgINDEL*HG002complexvarhet
72.0208
60.7851
88.3522
57.0408
28090181223012939722361
59.4411
anovak-vgINDEL*HG002complexvarhetalt
0.0000
29.8459
0.0000
0.0000
11042595000
anovak-vgINDEL*HG002complexvarhomalt
75.7278
94.2021
63.3115
49.8629
254601567259401503214199
94.4585
anovak-vgINDEL*HG002compoundhet*
36.9041
30.6776
46.3018
57.6241
919120769158131833913521
73.7281
anovak-vgINDEL*HG002compoundhethet
52.7411
50.6595
55.0010
54.9014
2074202013874113517959
70.1172
anovak-vgINDEL*HG002compoundhethetalt
0.0000
25.9095
0.0000
0.0000
652418656000
anovak-vgINDEL*HG002compoundhethomalt
34.7177
86.4431
21.7206
63.7894
59393193969885562
79.5936
anovak-vgINDEL*decoy*
67.7419
60.0000
77.7778
99.9553
64720
0.0000
anovak-vgINDEL*decoyhet
72.7273
66.6667
80.0000
99.9643
42410
0.0000
anovak-vgINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDEL*decoyhomalt
70.5882
66.6667
75.0000
99.9345
21310
0.0000
anovak-vgINDEL*func_cds*
81.4334
80.2247
82.6790
38.5816
357883587554
72.0000
anovak-vgINDEL*func_cdshet
74.7761
69.6262
80.7487
43.8438
149651513619
52.7778
anovak-vgINDEL*func_cdshetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgINDEL*func_cdshomalt
87.7119
91.5929
84.1463
33.8710
207192073935
89.7436
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.8320
33.8727
48.3358
55.3849
34126661419744863438
76.6384
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.7905
46.8317
46.7493
53.6445
18922148309235222706
76.8313
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
13.6768
0.0000
0.0000
5233301000
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
48.9231
45.1335
53.4074
60.1656
99712121105964732
75.9336
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
56.0510
55.0000
57.1429
99.4951
119865
83.3333
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
70.5882
75.0000
66.6667
99.4646
93633
100.0000
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
40.0000
40.0000
40.0000
99.5421
23232
66.6667
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
72.8701
70.9790
74.8646
68.2103
6703927410796292673520426
76.4017
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
75.7760
77.8397
73.8189
67.4300
3757410697519361842013343
72.4376
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
28.1118
0.0000
0.0000
433411083000
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
79.2304
81.6976
76.9079
69.6191
2513156302769383157083
85.1834
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.1592
62.6870
61.6403
53.4558
1910711373300861872313632
72.8088
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
25.3457
0.0000
0.0000
423412471000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
65.4735
66.2226
64.7412
60.6352
1203061361347273376068
82.7041
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
63.6599
61.2245
66.2970
66.6238
13208361375699438
62.6609
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
63.0461
57.4841
69.7998
69.3027
722534802347171
49.2795
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
23.9521
0.0000
0.0000
40127000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
68.3076
76.1255
61.9459
62.5658
558175573352267
75.8523
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
53.3898
52.9412
53.8462
99.5165
98765
83.3333
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.0377
70.0000
62.5000
99.5059
73533
100.0000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
44.4444
50.0000
40.0000
99.5327
22232
66.6667
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
73.8753
73.0416
74.7283
69.3443
3739138038501302863
66.2826
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
72.7114
67.5333
78.7495
70.8829
20269742179588262
44.5578
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
30.9013
0.0000
0.0000
72161000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
77.6220
87.0095
70.0629
67.3332
16412451671714601
84.1737
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.9189
77.3944
78.4506
71.4753
28048192876790545
68.9873
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
76.8360
71.2348
83.3933
72.7285
15236151622323129
39.9381