PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-34 / 34
egarrison-hhgaSNP*func_cds*
99.9477
99.9725
99.9229
23.9159
18145518145140
0.0000
ndellapenna-hhgaSNP*func_cds*
99.9367
99.9614
99.9119
23.5700
18143718143160
0.0000
hfeng-pmm3SNP*func_cds*
99.9367
99.9669
99.9064
23.5356
18144618141170
0.0000
hfeng-pmm1SNP*func_cds*
99.9366
99.9614
99.9119
23.2953
18143718140160
0.0000
rpoplin-dv42SNP*func_cds*
99.9366
99.9449
99.9284
24.7263
181401018137133
23.0769
dgrover-gatkSNP*func_cds*
99.9284
99.9614
99.8954
24.8199
18143718140190
0.0000
hfeng-pmm2SNP*func_cds*
99.9174
99.9780
99.8569
24.2548
18146418143260
0.0000
jli-customSNP*func_cds*
99.9036
99.9559
99.8514
23.3699
18142818142270
0.0000
raldana-dualsentieonSNP*func_cds*
99.8926
99.9614
99.8239
23.4025
18143718140320
0.0000
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
astatham-gatkSNP*func_cds*
99.8621
99.7796
99.9448
24.2600
181104018107100
0.0000
cchapple-customSNP*func_cds*
99.7855
99.9174
99.6539
26.7611
181351518142631
1.5873
qzeng-customSNP*func_cds*
99.7598
99.8182
99.7016
28.7413
181173318040544
7.4074
ckim-vqsrSNP*func_cds*
99.7574
99.7080
99.8069
31.6969
180975318094350
0.0000
gduggal-snapfbSNP*func_cds*
99.6978
99.9614
99.4355
28.3431
181437181431032
1.9418
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
ltrigg-rtg1SNP*func_cds*
99.6647
99.8898
99.4405
22.8252
1813020181291021
0.9804
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
asubramanian-gatkSNP*func_cds*
99.6470
99.5537
99.7405
30.0602
180698118066471
2.1277
gduggal-bwafbSNP*func_cds*
99.6211
99.9504
99.2939
30.1552
181419181411292
1.5504
ckim-dragenSNP*func_cds*
99.5474
99.9669
99.1313
30.5099
181446181441591
0.6289
ghariani-varprowlSNP*func_cds*
99.5441
99.8512
99.2389
30.8362
18123271812313914
10.0719
gduggal-bwaplatSNP*func_cds*
99.4779
99.2121
99.7452
34.2475
1800714318007464
8.6957
gduggal-snapplatSNP*func_cds*
99.4703
99.3223
99.6187
31.7106
1802712318027695
7.2464
jmaeng-gatkSNP*func_cds*
99.4513
99.8678
99.0382
31.9360
1812624181231761
0.5682
mlin-fermikitSNP*func_cds*
99.4453
99.2617
99.6295
19.0809
18016134180166748
71.6418
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
jpowers-varprowlSNP*func_cds*
99.3809
99.4931
99.2689
29.1793
18058921805813314
10.5263
gduggal-snapvardSNP*func_cds*
99.3360
99.0138
99.6603
29.3432
17971179178956123
37.7049
gduggal-bwavardSNP*func_cds*
99.3111
98.9862
99.6380
30.1556
17966184178926523
35.3846
jlack-gatkSNP*func_cds*
99.3020
99.9614
98.6513
31.6355
181437181402481
0.4032
anovak-vgSNP*func_cds*
98.5581
98.0331
99.0887
29.8522
1779335717724163111
68.0982
eyeh-varpipeSNP*func_cds*
98.2084
99.9669
96.5106
26.4105
181446179506491
0.1541
ciseli-customSNP*func_cds*
97.9137
99.4601
96.4146
25.6110
18052981799066942
6.2780