PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
86001-86044 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.5714 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.8889 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0888 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | homalt | 99.2828 | 98.7905 | 99.7801 | 74.0325 | 4084 | 50 | 4084 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | * | * | 99.4429 | 99.3110 | 99.5751 | 58.2332 | 145734 | 1011 | 145779 | 622 | 549 | 88.2637 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9540 | 95.2267 | 96.6924 | 48.5132 | 13127 | 658 | 13126 | 449 | 442 | 98.4410 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 89.7959 | 84.6154 | 95.6522 | 78.3019 | 22 | 4 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | * | 98.7675 | 98.5691 | 98.9667 | 80.4011 | 2962 | 43 | 2969 | 31 | 18 | 58.0645 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8976 | 99.8720 | 99.9231 | 28.9976 | 3901 | 5 | 3900 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | * | 96.8421 | 96.2092 | 97.4834 | 91.8033 | 736 | 29 | 736 | 19 | 14 | 73.6842 | |
| rpoplin-dv42 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D1_5 | * | het | 99.5696 | 99.7077 | 99.4320 | 57.4420 | 87318 | 256 | 87348 | 499 | 434 | 86.9739 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.1229 | 98.2424 | 90.3349 | 66.0632 | 3801 | 68 | 3776 | 404 | 398 | 98.5149 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.4286 | 88.8889 | 94.1176 | 73.0159 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | het | 98.4530 | 98.2748 | 98.6318 | 80.8695 | 1652 | 29 | 1658 | 23 | 15 | 65.2174 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8728 | 99.8982 | 99.8474 | 55.2916 | 3927 | 4 | 3927 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8991 | 99.8789 | 99.9192 | 29.1154 | 2475 | 3 | 2474 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | het | 97.0280 | 97.0280 | 97.0280 | 91.3647 | 555 | 17 | 555 | 17 | 12 | 70.5882 | |
| rpoplin-dv42 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | * | hetalt | 96.7748 | 94.2997 | 99.3834 | 61.0557 | 9661 | 584 | 9671 | 60 | 59 | 98.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9410 | 92.7025 | 99.4141 | 25.1041 | 6593 | 519 | 6617 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||