PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2251-2300 / 86044 show all
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
97.7147
97.4166
98.0146
32.9344
388410339007974
93.6709
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_51to200*
61.5814
69.3069
55.4054
91.6337
7031826626
39.3939
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_51to200het
57.1040
68.1818
49.1228
92.0943
4521565821
36.2069
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
73.8636
71.4286
76.4706
89.6024
25102685
62.5000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50*
97.3224
97.0558
97.5904
32.2861
379111538079461
64.8936
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50het
96.9633
96.8927
97.0341
36.0748
24017724217441
55.4054
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
97.9888
97.4071
98.5775
24.3272
13903713862020
100.0000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_51to200*
62.5000
62.5000
62.5000
94.8718
53532
66.6667
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_51to200het
66.6667
66.6667
66.6667
95.5556
42421
50.0000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
50.0000
50.0000
50.0000
90.4762
11111
100.0000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtimap_l100_m0_e0*
81.1499
85.0168
77.6195
74.1271
1850932621836452951408
26.5911
anovak-vgSNPtimap_l100_m0_e0het
78.0640
88.2071
70.0131
76.8266
1233416491226052511367
26.0331
anovak-vgSNPtimap_l100_m0_e0hetalt
0.0000
35.7143
0.0000
0.0000
59000
anovak-vgSNPtimap_l100_m0_e0homalt
88.2155
79.3671
99.2843
61.2798
6170160461044441
93.1818
anovak-vgSNPtimap_l100_m1_e0*
84.3963
88.5106
80.6475
68.7475
42424550742052100912274
22.5349
anovak-vgSNPtimap_l100_m1_e0het
80.6718
90.3580
72.8613
71.8309
2705528872684599992187
21.8722
anovak-vgSNPtimap_l100_m1_e0hetalt
0.0000
34.4828
0.0000
0.0000
1019000
anovak-vgSNPtimap_l100_m1_e0homalt
91.9372
85.5178
99.3987
57.5594
153592601152079287
94.5652
anovak-vgSNPtimap_l100_m2_e0*
84.5385
88.5991
80.8339
70.4808
43379558243002101962298
22.5383
anovak-vgSNPtimap_l100_m2_e0het
80.8461
90.4056
73.1149
73.2980
27684293827470101012208
21.8592
anovak-vgSNPtimap_l100_m2_e0hetalt
0.0000
36.6667
0.0000
0.0000
1119000
anovak-vgSNPtimap_l100_m2_e0homalt
92.0181
85.6628
99.3921
60.4480
156842625155329590
94.7368
anovak-vgSNPtimap_l100_m2_e1*
84.6108
88.6390
80.9329
70.4744
43863562243482102442310
22.5498
anovak-vgSNPtimap_l100_m2_e1het
80.9356
90.4328
73.2435
73.3025
27998296227782101492220
21.8741
anovak-vgSNPtimap_l100_m2_e1hetalt
0.0000
35.4839
0.0000
0.0000
1120000
anovak-vgSNPtimap_l100_m2_e1homalt
92.0569
85.7251
99.3985
60.4006
158542640157009590
94.7368
anovak-vgSNPtimap_l125_m0_e0*
79.1475
83.1766
75.4908
80.4095
106152147105373421933
27.2727
anovak-vgSNPtimap_l125_m0_e0het
76.2921
87.1596
67.8342
82.4188
7202106171663398912
26.8393
anovak-vgSNPtimap_l125_m0_e0hetalt
0.0000
37.5000
0.0000
0.0000
35000
anovak-vgSNPtimap_l125_m0_e0homalt
86.0648
75.9296
99.3223
69.5933
3410108133712321
91.3043
anovak-vgSNPtimap_l125_m1_e0*
81.2273
86.8110
76.3184
74.3923
2546638692525378361746
22.2818
anovak-vgSNPtimap_l125_m1_e0het
77.2287
89.8883
67.6948
76.8145
1641918471630777821697
21.8067
anovak-vgSNPtimap_l125_m1_e0hetalt
0.0000
33.3333
0.0000
0.0000
816000
anovak-vgSNPtimap_l125_m1_e0homalt
89.7681
81.8379
99.4000
64.4522
9039200689465449
90.7407
anovak-vgSNPtimap_l125_m2_e0*
81.4788
86.9291
76.6717
75.9478
2630339552608679371770
22.3006
anovak-vgSNPtimap_l125_m2_e0het
77.5170
89.8919
68.1370
78.1191
1696819081685378811719
21.8120
anovak-vgSNPtimap_l125_m2_e0hetalt
0.0000
33.3333
0.0000
0.0000
816000
anovak-vgSNPtimap_l125_m2_e0homalt
89.9353
82.1183
99.3971
67.3107
9327203192335651
91.0714