PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2151-2200 / 86044 show all
anovak-vgSNP*segdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*segdupwithalthomalt
0.0000
100.0000
00000
anovak-vgSNP*tech_badpromoters*
89.4635
84.0764
95.5882
39.8230
1322513066
100.0000
anovak-vgSNP*tech_badpromotershet
84.5070
77.9221
92.3077
45.8333
60176055
100.0000
anovak-vgSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*tech_badpromotershomalt
94.1001
90.0000
98.5915
33.0189
7287011
100.0000
anovak-vgSNPti**
98.4812
98.2960
98.6672
19.8346
20499803553820437292760712786
46.3143
anovak-vgSNPti*het
98.0963
98.0413
98.1515
22.3908
1256788251091253632236109204
38.9835
anovak-vgSNPti*hetalt
0.0000
15.8076
0.0000
0.0000
92490000
anovak-vgSNPti*homalt
99.1281
98.7623
99.4967
15.3503
793100993979009739973582
89.6172
anovak-vgSNPtiHG002complexvar*
97.6154
96.7854
98.4597
17.8294
4920931634448465575826075
80.1240
anovak-vgSNPtiHG002complexvarhet
97.2372
96.4650
98.0220
17.7484
3036391112729961060464694
77.6381
anovak-vgSNPtiHG002complexvarhetalt
0.0000
17.3913
0.0000
0.0000
36171000
anovak-vgSNPtiHG002complexvarhomalt
98.2762
97.3918
99.1768
17.9619
188418504618504515361381
89.9089
anovak-vgSNPtiHG002compoundhet*
77.8164
75.3290
80.4737
38.3806
1316643121352232812578
78.5736
anovak-vgSNPtiHG002compoundhethet
76.5771
76.2336
76.9238
40.2064
72462259824724742044
82.6192
anovak-vgSNPtiHG002compoundhethetalt
0.0000
15.8895
0.0000
0.0000
92487000
anovak-vgSNPtiHG002compoundhethomalt
82.5870
78.8207
86.7313
34.8753
582815665275807534
66.1710
anovak-vgSNPtidecoy*
0.0000
0.0000
50.0000
99.9986
00111
100.0000
anovak-vgSNPtidecoyhet
0.0000
0.0000
99.9992
00011
100.0000
anovak-vgSNPtidecoyhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9959
00100
anovak-vgSNPtifunc_cds*
98.6277
98.0852
99.1763
27.7317
135232641348611279
70.5357
anovak-vgSNPtifunc_cdshet
98.3229
97.6129
99.0434
32.3272
830120382838049
61.2500
anovak-vgSNPtifunc_cdshetalt
0.0000
37.5000
0.0000
0.0000
35000
anovak-vgSNPtifunc_cdshomalt
99.1630
98.9384
99.3887
18.9378
52195652033230
93.7500
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.3819
93.7500
91.0531
69.7462
30452033104305131
42.9508
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
90.5371
93.0336
88.1711
73.4829
1883141193826097
37.3077
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.6046
94.9346
96.2841
59.3488
11626211664534
75.5556
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.7089
96.7345
94.7048
54.9593
27046913278291556769
49.4216
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8371
96.1907
93.5210
57.8026
17171680177401229505
41.0903
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
16.6667
0.0000
0.0000
15000
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.2998
97.7430
96.8606
48.6593
987422810089327264
80.7339
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
90.9171
92.2101
89.6598
73.7675
2871724262930833801164
34.4379
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
25.0000
0.0000
0.0000
39000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1588
93.9924
96.3545
65.5291
1085869410969415307
73.9759
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.5233
95.1335
95.9163
58.0490
2815144284212162
51.2397
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.5830
94.5931
94.5728
62.5553
173299176010145
44.5545
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.0857
96.0106
98.1851
47.3483
10834510822017
85.0000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000