PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1951-2000 / 86044 show all
anovak-vgINDELI6_15segduphetalt
0.0000
20.0000
0.0000
0.0000
936000
anovak-vgINDELI6_15segduphomalt
59.8909
80.8511
47.5610
87.6506
389394342
97.6744
anovak-vgINDELI6_15segdupwithalt*
0.0000
100.0000
00000
anovak-vgINDELI6_15segdupwithalthet
0.0000
100.0000
00000
anovak-vgINDELI6_15segdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELI6_15segdupwithalthomalt
0.0000
100.0000
00000
anovak-vgINDELI6_15tech_badpromoters*
57.1429
46.1538
75.0000
50.0000
67622
100.0000
anovak-vgINDELI6_15tech_badpromotershet
25.0000
14.2857
100.0000
40.0000
16300
anovak-vgINDELI6_15tech_badpromotershetalt
0.0000
66.6667
0.0000
0.0000
21000
anovak-vgINDELI6_15tech_badpromotershomalt
75.0000
100.0000
60.0000
54.5455
30322
100.0000
anovak-vgSNP***
98.4545
98.3357
98.5736
21.3437
30037965083829873484322718700
43.2600
anovak-vgSNP**het
98.0636
98.0936
98.0337
24.0083
18378833571818289093668413178
35.9230
anovak-vgSNP**hetalt
0.0000
14.4661
0.0000
0.0000
126745000
anovak-vgSNP**homalt
99.1091
98.7819
99.4384
16.6644
116578714375115843965435522
84.3955
anovak-vgSNP*HG002complexvar*
97.6964
96.9184
98.4870
19.4533
73113823247712315109438438
77.1087
anovak-vgSNP*HG002complexvarhet
97.3572
96.6062
98.1199
19.3647
4497021579843902284126308
74.9881
anovak-vgSNP*HG002complexvarhetalt
0.0000
15.8065
0.0000
0.0000
49261000
anovak-vgSNP*HG002complexvarhomalt
98.2895
97.5091
99.0824
19.5966
281387718827329325312130
84.1565
anovak-vgSNP*HG002compoundhet*
78.0620
76.6207
79.5586
43.6697
1978560372029752153696
70.8725
anovak-vgSNP*HG002compoundhethet
78.0560
77.3875
78.7362
46.6128
1097232061232333282553
76.7127
anovak-vgSNP*HG002compoundhethetalt
0.0000
14.6172
0.0000
0.0000
126736000
anovak-vgSNP*HG002compoundhethomalt
80.7165
80.5695
80.8640
38.2684
86872095797418871143
60.5723
anovak-vgSNP*decoy*
0.0000
0.0000
50.0000
99.9991
00111
100.0000
anovak-vgSNP*decoyhet
0.0000
0.0000
99.9995
00011
100.0000
anovak-vgSNP*decoyhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*decoyhomalt
0.0000
0.0000
100.0000
99.9974
00100
anovak-vgSNP*func_cds*
98.5581
98.0331
99.0887
29.8522
1779335717724163111
68.0982
anovak-vgSNP*func_cdshet
98.2393
97.5540
98.9342
34.7247
108882731086111770
59.8291
anovak-vgSNP*func_cdshetalt
0.0000
30.0000
0.0000
0.0000
37000
anovak-vgSNP*func_cdshomalt
99.1150
98.8967
99.3342
20.4124
69027768634641
89.1304
anovak-vgSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.1744
93.3669
91.0119
70.2375
44483164506445188
42.2472
anovak-vgSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
90.2601
92.3740
88.2408
73.6079
27862302844379139
36.6755
anovak-vgSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.6272
95.0801
96.1806
60.9315
16628616626649
74.2424
anovak-vgSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1202
97.0035
95.2529
60.1354
5396416675524027531338
48.6015
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.3736
96.4849
94.2876
62.2229
341741245351082127869
40.8557
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
23.0769
0.0000
0.0000
310000
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.4699
97.9603
96.9843
55.7493
1978741220132626469
74.9201
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
90.4686
92.4642
88.5573
75.8297
4225834444299955561706
30.7055
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
33.3333
0.0000
0.0000
510000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1935
94.2916
96.1127
68.3224
1600696916096651464
71.2750
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.7578
95.2969
96.2233
58.1854
4093202410216185
52.7950
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.9595
94.7878
95.1319
62.5104
2546140256013160
45.8015
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.1094
96.1467
98.0916
47.8953
15476215423025
83.3333