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Truth Challenge
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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1651-1700 / 86044 show all | |||||||||||||||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 7.2626 | 0.0000 | 0.0000 | 13 | 166 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 66.6667 | 0 | 0 | 1 | 3 | 3 | 100.0000 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 59.0705 | 52.5583 | 67.4247 | 65.2810 | 1397 | 1261 | 3024 | 1461 | 1247 | 85.3525 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 41.7184 | 27.7293 | 84.1930 | 71.7265 | 381 | 993 | 1518 | 285 | 107 | 37.5439 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 26.8987 | 0.0000 | 0.0000 | 85 | 231 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 70.9064 | 96.1777 | 56.1521 | 58.9971 | 931 | 37 | 1506 | 1176 | 1140 | 96.9388 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 54.2561 | 49.7820 | 59.6139 | 54.7156 | 1941 | 1958 | 3057 | 2071 | 1674 | 80.8305 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 44.8785 | 34.5273 | 64.0937 | 56.3014 | 588 | 1115 | 1669 | 935 | 605 | 64.7059 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 377 | 754 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.7372 | 91.6432 | 54.9921 | 52.9543 | 976 | 89 | 1388 | 1136 | 1069 | 94.1021 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.0406 | 21.9331 | 42.9630 | 60.8128 | 59 | 210 | 116 | 154 | 129 | 83.7662 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.5378 | 41.1765 | 46.1864 | 59.0278 | 21 | 30 | 109 | 127 | 107 | 84.2520 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 17.0507 | 0.0000 | 0.0000 | 37 | 180 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 34.1463 | 100.0000 | 20.5882 | 69.9115 | 1 | 0 | 7 | 27 | 22 | 81.4815 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 56.0188 | 50.6667 | 62.6353 | 47.3349 | 532 | 518 | 984 | 587 | 499 | 85.0085 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 42.9780 | 30.8511 | 70.8134 | 48.1390 | 145 | 325 | 592 | 244 | 168 | 68.8525 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 44.0895 | 0.0000 | 0.0000 | 138 | 175 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.8590 | 93.2584 | 53.3333 | 46.3895 | 249 | 18 | 392 | 343 | 331 | 96.5015 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 12.7389 | 8.0000 | 31.2500 | 63.6364 | 2 | 23 | 5 | 11 | 11 | 100.0000 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 41.6667 | 69.2308 | 0 | 2 | 5 | 7 | 7 | 100.0000 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 8.6957 | 0.0000 | 0.0000 | 2 | 21 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 20.0000 | 0 | 0 | 0 | 4 | 4 | 100.0000 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | * | 58.1032 | 59.3002 | 56.9536 | 86.9940 | 322 | 221 | 344 | 260 | 177 | 68.0769 | |
anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | het | 47.2130 | 37.7301 | 63.0631 | 92.0173 | 123 | 203 | 140 | 82 | 10 | 12.1951 | |
anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.9183 | 93.2692 | 53.4031 | 79.4954 | 194 | 14 | 204 | 178 | 167 | 93.8202 | |
anovak-vg | INDEL | I1_5 | map_l100_m1_e0 | * | 58.0113 | 59.2233 | 56.8479 | 83.7016 | 793 | 546 | 826 | 627 | 447 | 71.2919 | |
anovak-vg | INDEL | I1_5 | map_l100_m1_e0 | het | 47.9187 | 38.2239 | 64.2023 | 89.2961 | 297 | 480 | 330 | 184 | 31 | 16.8478 | |
anovak-vg | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 15 | 29 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | map_l100_m1_e0 | homalt | 67.3385 | 92.8571 | 52.8222 | 77.1699 | 481 | 37 | 496 | 443 | 416 | 93.9052 | |
anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | * | 58.1587 | 59.3567 | 57.0081 | 84.8215 | 812 | 556 | 846 | 638 | 455 | 71.3166 | |
anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | het | 48.1704 | 38.4615 | 64.4359 | 89.9093 | 305 | 488 | 337 | 186 | 31 | 16.6667 | |
anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 15 | 29 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | homalt | 67.4017 | 92.6554 | 52.9657 | 79.0814 | 492 | 39 | 509 | 452 | 424 | 93.8053 | |
anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | * | 57.8586 | 58.9964 | 56.7639 | 84.9109 | 823 | 572 | 856 | 652 | 469 | 71.9325 | |
anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | het | 47.7657 | 37.9012 | 64.5714 | 90.0794 | 307 | 503 | 339 | 186 | 31 | 16.6667 | |
anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 15 | 30 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | homalt | 67.1322 | 92.7778 | 52.5941 | 79.0940 | 501 | 39 | 517 | 466 | 438 | 93.9914 |