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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1601-1650 / 86044 show all | |||||||||||||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 50.2462 | 41.8069 | 62.9545 | 59.3735 | 2684 | 3736 | 6614 | 3892 | 2524 | 64.8510 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 31.0550 | 0.0000 | 0.0000 | 1831 | 4065 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 67.0250 | 86.3068 | 54.7854 | 60.5199 | 3246 | 515 | 4110 | 3392 | 3132 | 92.3349 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 51.6345 | 52.3810 | 50.9091 | 64.2857 | 330 | 300 | 336 | 324 | 243 | 75.0000 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 45.3035 | 36.1272 | 60.7287 | 71.8358 | 125 | 221 | 150 | 97 | 38 | 39.1753 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 30 | 54 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 59.4656 | 87.5000 | 45.0363 | 57.4665 | 175 | 25 | 186 | 227 | 205 | 90.3084 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 56.8863 | 58.4740 | 55.3825 | 72.7189 | 797 | 566 | 818 | 659 | 497 | 75.4173 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 49.2182 | 39.3273 | 65.7559 | 77.6192 | 304 | 469 | 361 | 188 | 52 | 27.6596 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 48 | 64 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4166 | 93.0962 | 49.2457 | 68.6592 | 445 | 33 | 457 | 471 | 445 | 94.4798 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 58.4075 | 59.7906 | 57.0870 | 76.5044 | 571 | 384 | 584 | 439 | 331 | 75.3986 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 49.9912 | 39.7086 | 67.4603 | 80.7634 | 218 | 331 | 255 | 123 | 24 | 19.5122 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 45.0000 | 0.0000 | 0.0000 | 27 | 33 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 66.1849 | 94.2197 | 51.0078 | 73.0013 | 326 | 20 | 329 | 316 | 307 | 97.1519 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 32.6056 | 25.2495 | 46.0100 | 54.7659 | 253 | 749 | 369 | 433 | 324 | 74.8268 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 43.3697 | 38.1944 | 50.1672 | 54.4901 | 110 | 178 | 300 | 298 | 216 | 72.4832 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.2975 | 0.0000 | 0.0000 | 103 | 529 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 39.9479 | 48.7805 | 33.8235 | 55.5556 | 40 | 42 | 69 | 135 | 108 | 80.0000 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 47.1342 | 38.1966 | 61.5321 | 37.8247 | 2639 | 4270 | 5213 | 3259 | 2660 | 81.6201 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 53.2015 | 46.3732 | 62.3880 | 36.5667 | 748 | 865 | 4039 | 2435 | 1935 | 79.4661 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 30.1700 | 0.0000 | 0.0000 | 1402 | 3245 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 66.0268 | 75.3467 | 58.7588 | 41.5789 | 489 | 160 | 1174 | 824 | 725 | 87.9854 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 49.1489 | 40.2731 | 63.0429 | 36.1826 | 2389 | 3543 | 4848 | 2842 | 2348 | 82.6179 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 54.7235 | 48.0480 | 63.5530 | 34.9033 | 640 | 692 | 3742 | 2146 | 1725 | 80.3821 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 32.2661 | 0.0000 | 0.0000 | 1300 | 2729 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 68.9415 | 78.6340 | 61.3762 | 40.0333 | 449 | 122 | 1106 | 696 | 623 | 89.5115 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 49.1325 | 41.4437 | 60.3241 | 51.4691 | 3485 | 4924 | 6068 | 3991 | 3216 | 80.5813 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 51.1017 | 43.2290 | 62.4805 | 48.0708 | 1063 | 1396 | 4398 | 2641 | 1993 | 75.4638 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 30.3646 | 0.0000 | 0.0000 | 1449 | 3323 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.2455 | 82.5976 | 55.2980 | 57.8918 | 973 | 205 | 1670 | 1350 | 1223 | 90.5926 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 50.2462 | 41.8069 | 62.9545 | 59.3735 | 2684 | 3736 | 6614 | 3892 | 2524 | 64.8510 | |
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 31.0550 | 0.0000 | 0.0000 | 1831 | 4065 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 67.0250 | 86.3068 | 54.7854 | 60.5199 | 3246 | 515 | 4110 | 3392 | 3132 | 92.3349 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.6371 | 40.3001 | 68.1066 | 40.7912 | 2310 | 3422 | 6748 | 3160 | 2890 | 91.4557 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 50.7904 | 39.6185 | 70.7374 | 39.8375 | 540 | 823 | 5132 | 2123 | 1902 | 89.5902 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 33.0618 | 0.0000 | 0.0000 | 1258 | 2547 | 0 | 0 | 0 | ||
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.9057 | 90.7801 | 60.9122 | 43.2513 | 512 | 52 | 1616 | 1037 | 988 | 95.2748 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5313 | 12.1359 | 50.0000 | 45.6954 | 25 | 181 | 41 | 41 | 38 | 92.6829 | |
anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 44.4444 | 51.2821 | 43.8849 | 12 | 15 | 40 | 38 | 35 | 92.1053 |