PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85501-85550 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | * | 99.0394 | 98.8947 | 99.1845 | 66.6640 | 32478 | 363 | 32474 | 267 | 146 | 54.6816 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | het | 98.8725 | 98.8493 | 98.8958 | 68.4376 | 20961 | 244 | 20957 | 234 | 116 | 49.5726 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | homalt | 99.3564 | 98.9759 | 99.7398 | 62.7443 | 11501 | 119 | 11501 | 30 | 27 | 90.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | * | 99.3983 | 99.2625 | 99.5346 | 63.1596 | 71869 | 534 | 71858 | 336 | 196 | 58.3333 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | het | 99.2638 | 99.1402 | 99.3876 | 64.2170 | 44969 | 390 | 44957 | 277 | 141 | 50.9025 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | homalt | 99.6291 | 99.4667 | 99.7919 | 61.1512 | 26859 | 144 | 26860 | 56 | 52 | 92.8571 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | * | 99.4070 | 99.2740 | 99.5404 | 65.1757 | 73427 | 537 | 73416 | 339 | 198 | 58.4071 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | het | 99.2759 | 99.1530 | 99.3992 | 65.9847 | 46006 | 393 | 45994 | 278 | 141 | 50.7194 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | homalt | 99.6325 | 99.4768 | 99.7886 | 63.6376 | 27379 | 144 | 27380 | 58 | 54 | 93.1034 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | * | 99.4091 | 99.2775 | 99.5411 | 65.1919 | 74197 | 540 | 74186 | 342 | 199 | 58.1871 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | het | 99.2783 | 99.1577 | 99.3992 | 66.0072 | 46503 | 395 | 46491 | 281 | 142 | 50.5338 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | homalt | 99.6343 | 99.4783 | 99.7907 | 63.6404 | 27651 | 145 | 27652 | 58 | 54 | 93.1034 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | * | 98.7955 | 98.5969 | 98.9950 | 72.9367 | 19113 | 272 | 19110 | 194 | 120 | 61.8557 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | het | 98.6495 | 98.6418 | 98.6571 | 74.4583 | 12492 | 172 | 12489 | 170 | 97 | 57.0588 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | homalt | 99.0933 | 98.5101 | 99.6834 | 69.3810 | 6612 | 100 | 6612 | 21 | 20 | 95.2381 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | * | 99.2363 | 99.0558 | 99.4176 | 68.8661 | 44899 | 428 | 44893 | 263 | 168 | 63.8783 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | het | 99.0847 | 98.9539 | 99.2159 | 70.0178 | 28095 | 297 | 28089 | 222 | 128 | 57.6577 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | homalt | 99.4988 | 99.2251 | 99.7740 | 66.6415 | 16774 | 131 | 16774 | 38 | 37 | 97.3684 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | * | 99.2517 | 99.0733 | 99.4307 | 70.7955 | 46290 | 433 | 46284 | 265 | 170 | 64.1509 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | het | 99.1051 | 98.9733 | 99.2372 | 71.6337 | 29017 | 301 | 29011 | 223 | 129 | 57.8475 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.5854 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | homalt | 99.5066 | 99.2403 | 99.7743 | 69.1861 | 17243 | 132 | 17243 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | * | 99.2571 | 99.0784 | 99.4365 | 70.8435 | 46767 | 435 | 46761 | 265 | 170 | 64.1509 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | het | 99.1114 | 98.9777 | 99.2454 | 71.6791 | 29337 | 303 | 29331 | 223 | 129 | 57.8475 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.6397 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | homalt | 99.5110 | 99.2471 | 99.7764 | 69.2363 | 17400 | 132 | 17400 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | * | 98.4495 | 98.1632 | 98.7374 | 78.1997 | 11811 | 221 | 11808 | 151 | 101 | 66.8874 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | het | 98.3050 | 98.2620 | 98.3480 | 79.4809 | 7802 | 138 | 7799 | 131 | 82 | 62.5954 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | homalt | 98.7551 | 97.9702 | 99.5527 | 75.0450 | 4006 | 83 | 4006 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | * | 99.0457 | 98.8533 | 99.2389 | 73.2840 | 30258 | 351 | 30252 | 232 | 150 | 64.6552 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | het | 98.8884 | 98.7989 | 98.9780 | 74.2870 | 19084 | 232 | 19078 | 197 | 116 | 58.8832 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | homalt | 99.3277 | 98.9444 | 99.7139 | 71.2907 | 11154 | 119 | 11154 | 32 | 31 | 96.8750 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | * | 99.0736 | 98.8855 | 99.2624 | 74.9915 | 31497 | 355 | 31491 | 234 | 152 | 64.9573 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | het | 98.9235 | 98.8328 | 99.0144 | 75.6918 | 19898 | 235 | 19892 | 198 | 117 | 59.0909 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | homalt | 99.3437 | 98.9743 | 99.7158 | 73.6127 | 11579 | 120 | 11579 | 33 | 32 | 96.9697 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e1 | * | 99.0777 | 98.8916 | 99.2644 | 75.0455 | 31853 | 357 | 31847 | 236 | 152 | 64.4068 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e1 | het | 98.9259 | 98.8361 | 99.0157 | 75.7529 | 20126 | 237 | 20120 | 200 | 117 | 58.5000 | |