PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
351-400 / 86044 show all
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
52.3709
11253112500
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6997
99.7269
99.6725
54.7543
18265182661
16.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.7634
99.7296
99.7971
53.8905
29518295161
16.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
90.9774
1201200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.6481
99.5697
99.7266
69.7354
31009134310078534
40.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8762
99.8119
99.9405
50.3909
10083191008365
83.3333
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
83.8710
51500
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8628
99.8712
99.8543
55.6453
1782823178252614
53.8462
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8658
99.8462
99.8855
53.8968
2791643279133219
59.3750
rpoplin-dv42SNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.8773
99.7549
100.0000
64.8765
12213122300
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.3569
99.3083
99.4056
69.7301
2010142007125
41.6667
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5532
99.4766
99.6299
68.0748
3231173230125
41.6667
rpoplin-dv42SNPtifunc_cdshomalt
99.9716
99.9431
100.0000
21.4775
52723527200
rpoplin-dv42SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.8947
80800
rpoplin-dv42SNPtifunc_cdshet
99.9236
99.9530
99.8942
23.9564
85004849892
22.2222
rpoplin-dv42SNPtifunc_cds*
99.9420
99.9492
99.9347
23.0636
1378071377892
22.2222
rpoplin-dv42SNPtidecoyhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtidecoyhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtidecoyhet
0.0000
100.0000
00000
rpoplin-dv42SNPtidecoy*
0.0000
100.0000
00000
rpoplin-dv42SNPtiHG002compoundhethomalt
99.7770
99.8377
99.7163
30.8389
73821273822120
95.2381
rpoplin-dv42SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
21.6802
578157800
rpoplin-dv42SNPtiHG002compoundhethet
99.5469
99.3898
99.7044
38.8720
94475894452822
78.5714
rpoplin-dv42SNPtiHG002compoundhet*
99.6565
99.5938
99.7193
35.2092
1740771174054942
85.7143
rpoplin-dv42SNPtiHG002complexvarhomalt
99.9574
99.9530
99.9617
18.4113
193372911933677472
97.2973
rpoplin-dv42SNPtiHG002complexvarhetalt
99.0385
99.5169
98.5646
34.6875
206120633
100.0000
rpoplin-dv42SNPtiHG002complexvarhet
99.9002
99.8243
99.9761
16.8206
3142135533141527555
73.3333
rpoplin-dv42SNPtiHG002complexvar*
99.9216
99.8731
99.9701
17.4429
507791645507725152130
85.5263
rpoplin-dv42SNPti*homalt
99.9800
99.9747
99.9853
16.8487
802835203802832118106
89.8305
rpoplin-dv42SNPti*hetalt
99.4012
99.8282
98.9779
50.2542
581158166
100.0000
rpoplin-dv42SNPti*het
99.9511
99.9279
99.9742
18.1937
12809679241280907330164
49.6970
rpoplin-dv42SNPti**
99.9621
99.9459
99.9782
17.6958
208438311282084320454276
60.7930
rpoplin-dv42SNP*tech_badpromotershomalt
98.7500
98.7500
98.7500
50.9202
7917911
100.0000
rpoplin-dv42SNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNP*tech_badpromotershet
98.7013
98.7013
98.7013
42.1053
7617611
100.0000
rpoplin-dv42SNP*tech_badpromoters*
98.7261
98.7261
98.7261
46.9595
155215522
100.0000
rpoplin-dv42SNP*segdupwithalthomalt
0.0000
100.0000
00000
rpoplin-dv42SNP*segdupwithalthetalt
0.0000
100.0000
00000
rpoplin-dv42SNP*segdupwithalthet
0.0000
100.0000
00000
rpoplin-dv42SNP*segdupwithalt*
0.0000
100.0000
00000