PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2701-2750 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6638 | 99.3464 | 94.1222 | 70.3644 | 1216 | 8 | 1217 | 76 | 58 | 76.3158 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.4400 | 95.0593 | 97.8615 | 70.2740 | 1924 | 100 | 1922 | 42 | 5 | 11.9048 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.5257 | 96.6749 | 96.3770 | 70.3153 | 3140 | 108 | 3139 | 118 | 63 | 53.3898 | |
| mlin-fermikit | SNP | ti | func_cds | homalt | 99.5745 | 99.8294 | 99.3210 | 18.8179 | 5266 | 9 | 5266 | 36 | 34 | 94.4444 | |
| mlin-fermikit | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | func_cds | het | 99.4565 | 98.9887 | 99.9288 | 17.2332 | 8418 | 86 | 8418 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | func_cds | * | 99.5022 | 99.3109 | 99.6942 | 17.8687 | 13692 | 95 | 13692 | 42 | 34 | 80.9524 | |
| mlin-fermikit | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | HG002compoundhet | homalt | 93.7665 | 98.4176 | 89.5352 | 35.5677 | 7277 | 117 | 7281 | 851 | 725 | 85.1939 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | hetalt | 97.2493 | 94.6459 | 100.0000 | 20.8092 | 548 | 31 | 548 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | HG002compoundhet | het | 93.4304 | 88.3535 | 99.1262 | 38.1960 | 8398 | 1107 | 8395 | 74 | 14 | 18.9189 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | * | 93.7043 | 92.8195 | 94.6061 | 36.5228 | 16223 | 1255 | 16224 | 925 | 739 | 79.8919 | |
| mlin-fermikit | SNP | ti | HG002complexvar | homalt | 98.3813 | 98.4958 | 98.2669 | 18.8239 | 190554 | 2910 | 190572 | 3361 | 3261 | 97.0247 | |
| mlin-fermikit | SNP | ti | HG002complexvar | hetalt | 96.0000 | 92.7536 | 99.4819 | 33.9041 | 192 | 15 | 192 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | HG002complexvar | het | 98.1941 | 96.4761 | 99.9743 | 15.7268 | 303674 | 11092 | 303641 | 78 | 14 | 17.9487 | |
| mlin-fermikit | SNP | ti | HG002complexvar | * | 98.2652 | 97.2431 | 99.3090 | 16.9696 | 494420 | 14017 | 494405 | 3440 | 3276 | 95.2326 | |
| mlin-fermikit | SNP | ti | * | homalt | 99.0118 | 99.0588 | 98.9648 | 15.5441 | 795481 | 7558 | 795502 | 8321 | 8052 | 96.7672 | |
| mlin-fermikit | SNP | ti | * | hetalt | 97.1781 | 94.6735 | 99.8188 | 32.3529 | 551 | 31 | 551 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | * | het | 98.8419 | 97.7886 | 99.9182 | 14.5462 | 1253549 | 28348 | 1253519 | 1026 | 32 | 3.1189 | |
| mlin-fermikit | SNP | ti | * | * | 98.9073 | 98.2768 | 99.5460 | 14.9446 | 2049581 | 35937 | 2049572 | 9348 | 8085 | 86.4891 | |
| mlin-fermikit | SNP | * | tech_badpromoters | homalt | 95.1807 | 98.7500 | 91.8605 | 44.8718 | 79 | 1 | 79 | 7 | 6 | 85.7143 | |
| mlin-fermikit | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | * | tech_badpromoters | het | 92.4138 | 87.0130 | 98.5294 | 38.1818 | 67 | 10 | 67 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | tech_badpromoters | * | 93.8907 | 92.9936 | 94.8052 | 42.1053 | 146 | 11 | 146 | 8 | 6 | 75.0000 | |
| mlin-fermikit | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | segdup | homalt | 98.6182 | 98.6689 | 98.5676 | 86.0366 | 10600 | 143 | 10597 | 154 | 135 | 87.6623 | |
| mlin-fermikit | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 7 | 0 | 7 | 0 | 0 | ||
| mlin-fermikit | SNP | * | segdup | het | 97.6489 | 96.6622 | 98.6560 | 85.6660 | 16739 | 578 | 16736 | 228 | 1 | 0.4386 | |
| mlin-fermikit | SNP | * | segdup | * | 98.0230 | 97.4311 | 98.6220 | 85.8156 | 27346 | 721 | 27340 | 382 | 136 | 35.6021 | |
| mlin-fermikit | SNP | * | map_siren | homalt | 84.4526 | 80.6077 | 88.6825 | 45.6664 | 44460 | 10696 | 44453 | 5673 | 5485 | 96.6861 | |
| mlin-fermikit | SNP | * | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 65.9259 | 46 | 35 | 46 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_siren | het | 82.6394 | 70.9993 | 98.8447 | 48.1176 | 64603 | 26388 | 64595 | 755 | 18 | 2.3841 | |
| mlin-fermikit | SNP | * | map_siren | * | 83.3638 | 74.6157 | 94.4357 | 47.0930 | 109109 | 37119 | 109094 | 6428 | 5503 | 85.6098 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | homalt | 53.1320 | 43.3775 | 68.5465 | 76.1343 | 1179 | 1539 | 1179 | 541 | 500 | 92.4214 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l250_m2_e1 | het | 43.9700 | 28.3625 | 97.7734 | 83.3895 | 1493 | 3771 | 1493 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | * | 47.5699 | 33.4544 | 82.2913 | 80.2109 | 2672 | 5315 | 2672 | 575 | 501 | 87.1304 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | homalt | 52.9680 | 43.1869 | 68.4770 | 75.7965 | 1160 | 1526 | 1160 | 534 | 494 | 92.5094 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l250_m2_e0 | het | 43.6369 | 28.0901 | 97.7227 | 83.2153 | 1459 | 3735 | 1459 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | * | 47.3085 | 33.2150 | 82.1776 | 79.9585 | 2619 | 5266 | 2619 | 568 | 495 | 87.1479 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | homalt | 51.7475 | 41.7783 | 67.9657 | 72.7453 | 1029 | 1434 | 1029 | 485 | 445 | 91.7526 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||