PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2601-2650 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | homalt | 75.4463 | 68.6657 | 83.7129 | 51.9470 | 12572 | 5737 | 12572 | 2446 | 2353 | 96.1979 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 72.0930 | 12 | 18 | 12 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | het | 72.2999 | 57.0570 | 98.6561 | 56.4180 | 17472 | 13150 | 17472 | 238 | 9 | 3.7815 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | * | 73.5756 | 61.3876 | 91.8021 | 54.4848 | 30056 | 18905 | 30056 | 2684 | 2362 | 88.0030 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | homalt | 75.0582 | 68.1626 | 83.5061 | 48.1080 | 12242 | 5718 | 12242 | 2418 | 2328 | 96.2779 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | hetalt | 55.0000 | 37.9310 | 100.0000 | 70.2703 | 11 | 18 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | het | 71.7393 | 56.3489 | 98.6955 | 52.5376 | 16872 | 13070 | 16872 | 223 | 9 | 4.0359 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | * | 73.0893 | 60.7644 | 91.6861 | 50.6018 | 29125 | 18806 | 29125 | 2641 | 2337 | 88.4892 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | homalt | 63.6297 | 55.5184 | 74.5166 | 48.8430 | 4316 | 3458 | 4316 | 1476 | 1404 | 95.1220 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 80.0000 | 2 | 12 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | het | 57.7466 | 40.8496 | 98.4828 | 55.5044 | 5712 | 8271 | 5712 | 88 | 4 | 4.5455 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | * | 60.1229 | 46.0705 | 86.5103 | 52.4193 | 10030 | 11741 | 10030 | 1564 | 1408 | 90.0256 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.8372 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.7826 | 6 | 0 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 96.5174 | 7 | 1 | 7 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3774 | 99.7197 | 97.0708 | 30.6893 | 1423 | 4 | 1425 | 43 | 41 | 95.3488 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9878 | 96.2873 | 99.7494 | 25.8824 | 2386 | 92 | 2388 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1333 | 97.5422 | 98.7316 | 27.8079 | 3810 | 96 | 3814 | 49 | 41 | 83.6735 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 76.9887 | 88.5714 | 68.0851 | 93.5351 | 31 | 4 | 32 | 15 | 14 | 93.3333 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0343 | 69.6970 | 78.9474 | 95.0607 | 46 | 20 | 45 | 12 | 3 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.1220 | 76.2376 | 74.0385 | 94.4710 | 77 | 24 | 77 | 27 | 17 | 62.9630 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3991 | 99.3730 | 97.4441 | 42.0040 | 3962 | 25 | 3965 | 104 | 97 | 93.2692 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3589 | 97.3161 | 99.4242 | 37.2504 | 6563 | 181 | 6562 | 38 | 5 | 13.1579 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3740 | 98.0805 | 98.6692 | 39.1607 | 10526 | 206 | 10528 | 142 | 102 | 71.8310 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.8267 | 99.3639 | 98.2952 | 44.3446 | 2187 | 14 | 2191 | 38 | 38 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1067 | 98.2534 | 99.9750 | 43.4659 | 3994 | 71 | 3992 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0073 | 98.6439 | 99.3734 | 43.8166 | 6183 | 85 | 6185 | 39 | 38 | 97.4359 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.7427 | 6 | 0 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 97.1510 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 75.0000 | 60.0000 | 96.9605 | 12 | 4 | 12 | 8 | 4 | 50.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2645 | 99.7630 | 89.3404 | 69.5631 | 1684 | 4 | 1693 | 202 | 155 | 76.7327 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2696 | 94.2821 | 98.3427 | 70.1080 | 2968 | 180 | 2967 | 50 | 2 | 4.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.5288 | 96.1960 | 94.8708 | 69.9124 | 4653 | 184 | 4661 | 252 | 157 | 62.3016 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.9297 | 98.8747 | 93.1551 | 69.8469 | 11422 | 130 | 11432 | 840 | 741 | 88.2143 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 81.6667 | 11 | 1 | 11 | 0 | 0 | ||