PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2551-2600 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | het | 44.9323 | 29.1604 | 97.8637 | 82.7453 | 962 | 2337 | 962 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | * | 48.6646 | 34.1017 | 84.9362 | 80.0607 | 1731 | 3345 | 1731 | 307 | 262 | 85.3420 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | homalt | 54.3759 | 43.3391 | 72.9548 | 76.3218 | 758 | 991 | 758 | 281 | 257 | 91.4591 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | * | 48.4805 | 33.9257 | 84.9075 | 79.7858 | 1699 | 3309 | 1699 | 302 | 258 | 85.4305 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | homalt | 53.4856 | 42.2526 | 72.8541 | 73.1257 | 679 | 928 | 679 | 253 | 229 | 90.5138 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | het | 42.7481 | 27.3585 | 97.7136 | 79.5371 | 812 | 2156 | 812 | 19 | 1 | 5.2632 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | * | 47.0199 | 32.5617 | 84.5718 | 76.5901 | 1491 | 3088 | 1491 | 272 | 230 | 84.5588 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | homalt | 50.6550 | 39.9083 | 69.3227 | 79.0659 | 174 | 262 | 174 | 77 | 71 | 92.2078 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | het | 36.6957 | 22.5910 | 97.6852 | 83.7594 | 211 | 723 | 211 | 5 | 1 | 20.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | * | 41.9162 | 28.1022 | 82.4411 | 81.5488 | 385 | 985 | 385 | 82 | 72 | 87.8049 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | homalt | 61.4051 | 51.5794 | 75.8555 | 61.5254 | 3968 | 3725 | 3968 | 1263 | 1193 | 94.4576 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 75.0000 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | het | 56.1207 | 39.2931 | 98.1570 | 69.2394 | 5114 | 7901 | 5113 | 96 | 5 | 5.2083 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | * | 58.3031 | 43.8450 | 86.9877 | 65.8089 | 9086 | 11637 | 9085 | 1359 | 1198 | 88.1531 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | homalt | 61.2628 | 51.4049 | 75.7986 | 61.3196 | 3915 | 3701 | 3915 | 1250 | 1181 | 94.4800 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 73.3333 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | het | 55.8942 | 39.0731 | 98.1471 | 68.9855 | 5033 | 7848 | 5032 | 95 | 5 | 5.2632 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | * | 58.1126 | 43.6427 | 86.9367 | 65.5641 | 8952 | 11560 | 8951 | 1345 | 1186 | 88.1784 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | homalt | 60.2226 | 50.2115 | 75.2198 | 56.9340 | 3679 | 3648 | 3679 | 1212 | 1145 | 94.4719 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 66.6667 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | het | 54.4721 | 37.6880 | 98.2090 | 64.1838 | 4662 | 7708 | 4661 | 85 | 5 | 5.8824 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | * | 56.8574 | 42.3346 | 86.5470 | 60.8408 | 8345 | 11367 | 8344 | 1297 | 1150 | 88.6662 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | homalt | 53.2251 | 42.7381 | 70.5320 | 59.3142 | 1180 | 1581 | 1180 | 493 | 459 | 93.1034 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | het | 44.5289 | 28.7424 | 98.7862 | 66.7936 | 1465 | 3632 | 1465 | 18 | 3 | 16.6667 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | * | 48.0167 | 33.6471 | 83.8086 | 63.2254 | 2645 | 5216 | 2645 | 511 | 462 | 90.4110 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | homalt | 67.0382 | 58.2650 | 78.9219 | 57.4454 | 6676 | 4782 | 6676 | 1783 | 1698 | 95.2328 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 78.5714 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | het | 62.3819 | 45.6908 | 98.2867 | 64.4551 | 8721 | 10366 | 8720 | 152 | 7 | 4.6053 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | * | 64.3036 | 50.3876 | 88.8389 | 61.3583 | 15403 | 15166 | 15402 | 1935 | 1705 | 88.1137 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | homalt | 66.8459 | 58.0120 | 78.8535 | 57.3303 | 6589 | 4769 | 6589 | 1767 | 1683 | 95.2462 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 77.7778 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | het | 62.0977 | 45.3857 | 98.2903 | 64.2784 | 8567 | 10309 | 8566 | 149 | 7 | 4.6980 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | * | 64.0610 | 50.1091 | 88.7802 | 61.1948 | 15162 | 15096 | 15161 | 1916 | 1690 | 88.2046 | |
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | homalt | 66.1427 | 57.1480 | 78.4977 | 52.8912 | 6312 | 4733 | 6312 | 1729 | 1647 | 95.2574 | |
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 68.4211 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | het | 61.0167 | 44.2242 | 98.3680 | 59.8543 | 8078 | 10188 | 8077 | 134 | 7 | 5.2239 | |
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | * | 63.1485 | 49.0745 | 88.5410 | 56.6927 | 14396 | 14939 | 14395 | 1863 | 1654 | 88.7815 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | homalt | 56.8886 | 46.9829 | 72.0875 | 54.0574 | 2110 | 2381 | 2110 | 817 | 761 | 93.1457 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | het | 49.2645 | 32.8331 | 98.6182 | 61.3058 | 2713 | 5550 | 2712 | 38 | 3 | 7.8947 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | * | 52.3097 | 37.7919 | 84.9392 | 57.8951 | 4823 | 7939 | 4822 | 855 | 764 | 89.3567 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | homalt | 75.6197 | 68.8710 | 83.8347 | 52.0014 | 12737 | 5757 | 12737 | 2456 | 2363 | 96.2134 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | hetalt | 59.0909 | 41.9355 | 100.0000 | 71.1111 | 13 | 18 | 13 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | het | 72.5397 | 57.3547 | 98.6610 | 56.4877 | 17757 | 13203 | 17757 | 241 | 9 | 3.7344 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | * | 73.7873 | 61.6490 | 91.8775 | 54.5530 | 30507 | 18978 | 30507 | 2697 | 2372 | 87.9496 | |