PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2501-2550 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9682 | 99.6336 | 96.3576 | 67.1524 | 10060 | 37 | 10079 | 381 | 340 | 89.2388 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7857 | 13 | 0 | 13 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2029 | 96.8864 | 99.5557 | 62.5968 | 17021 | 547 | 17030 | 76 | 4 | 5.2632 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1160 | 97.8900 | 98.3429 | 64.4756 | 27094 | 584 | 27122 | 457 | 344 | 75.2735 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0556 | 99.2366 | 91.2127 | 73.6696 | 520 | 4 | 519 | 50 | 40 | 80.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6799 | 92.3387 | 97.1429 | 70.2456 | 916 | 76 | 918 | 27 | 3 | 11.1111 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8184 | 94.7230 | 94.9141 | 71.6532 | 1436 | 80 | 1437 | 77 | 43 | 55.8442 | |
| mlin-fermikit | SNP | tv | func_cds | homalt | 99.4152 | 99.7653 | 99.0676 | 23.6994 | 1700 | 4 | 1700 | 16 | 14 | 87.5000 | |
| mlin-fermikit | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 37.5000 | 10 | 0 | 10 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | func_cds | het | 99.1679 | 98.6827 | 99.6579 | 21.9982 | 2622 | 35 | 2622 | 9 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | func_cds | * | 99.2667 | 99.1078 | 99.4262 | 22.7208 | 4332 | 39 | 4332 | 25 | 14 | 56.0000 | |
| mlin-fermikit | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | HG002compoundhet | homalt | 90.3108 | 98.4357 | 83.4250 | 51.0104 | 3335 | 53 | 3337 | 663 | 585 | 88.2353 | |
| mlin-fermikit | SNP | tv | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | HG002compoundhet | het | 90.8488 | 84.0146 | 98.8934 | 54.3251 | 3926 | 747 | 3932 | 44 | 8 | 18.1818 | |
| mlin-fermikit | SNP | tv | HG002compoundhet | * | 91.2208 | 90.4965 | 91.9568 | 50.8884 | 8075 | 848 | 8083 | 707 | 593 | 83.8755 | |
| mlin-fermikit | SNP | tv | HG002complexvar | homalt | 98.2029 | 98.2799 | 98.1261 | 24.4893 | 93475 | 1636 | 93471 | 1785 | 1729 | 96.8627 | |
| mlin-fermikit | SNP | tv | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | HG002complexvar | het | 98.0988 | 96.3081 | 99.9573 | 20.3091 | 145169 | 5565 | 145103 | 62 | 9 | 14.5161 | |
| mlin-fermikit | SNP | tv | HG002complexvar | * | 98.1368 | 97.0653 | 99.2323 | 22.0366 | 238931 | 7224 | 238861 | 1848 | 1739 | 94.1017 | |
| mlin-fermikit | SNP | tv | * | homalt | 98.8702 | 98.8876 | 98.8528 | 20.1908 | 372928 | 4195 | 372923 | 4328 | 4101 | 94.7551 | |
| mlin-fermikit | SNP | tv | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | * | het | 98.7020 | 97.6537 | 99.7731 | 18.7114 | 577821 | 13883 | 577760 | 1314 | 14 | 1.0655 | |
| mlin-fermikit | SNP | tv | * | * | 98.7665 | 98.1308 | 99.4104 | 19.3147 | 951572 | 18126 | 951506 | 5643 | 4116 | 72.9399 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | tech_badpromoters | het | 92.6829 | 86.3636 | 100.0000 | 41.5385 | 38 | 6 | 38 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 40.7143 | 79 | 6 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdup | homalt | 98.7142 | 98.7209 | 98.7075 | 85.2139 | 7409 | 96 | 7408 | 97 | 86 | 88.6598 | |
| mlin-fermikit | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | segdup | het | 97.7090 | 96.7914 | 98.6442 | 84.9489 | 11644 | 386 | 11641 | 160 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | segdup | * | 98.0976 | 97.5329 | 98.6689 | 85.0585 | 19055 | 482 | 19051 | 257 | 86 | 33.4630 | |
| mlin-fermikit | SNP | ti | map_siren | homalt | 85.5625 | 81.8362 | 89.6443 | 44.4398 | 31029 | 6887 | 31025 | 3584 | 3486 | 97.2656 | |
| mlin-fermikit | SNP | ti | map_siren | hetalt | 71.9101 | 56.1404 | 100.0000 | 66.6667 | 32 | 25 | 32 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_siren | het | 83.4382 | 72.0464 | 99.1091 | 46.3223 | 44944 | 17438 | 44944 | 404 | 15 | 3.7129 | |
| mlin-fermikit | SNP | ti | map_siren | * | 84.2869 | 75.7361 | 95.0143 | 45.5372 | 76005 | 24350 | 76001 | 3988 | 3501 | 87.7884 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | homalt | 54.4040 | 43.3973 | 72.8910 | 76.6541 | 769 | 1003 | 769 | 286 | 261 | 91.2587 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||