PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2351-2400 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | tv | segdup | het | 97.5120 | 96.3685 | 98.6829 | 87.0738 | 5095 | 192 | 5095 | 68 | 1 | 1.4706 | |
| mlin-fermikit | SNP | tv | segdup | * | 97.8523 | 97.1988 | 98.5147 | 87.3016 | 8293 | 239 | 8291 | 125 | 50 | 40.0000 | |
| mlin-fermikit | SNP | tv | map_siren | homalt | 81.9952 | 77.9060 | 86.5373 | 48.2163 | 13431 | 3809 | 13428 | 2089 | 1999 | 95.6917 | |
| mlin-fermikit | SNP | tv | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 65.9259 | 46 | 35 | 46 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_siren | het | 80.8694 | 68.7161 | 98.2452 | 51.7745 | 19659 | 8950 | 19651 | 351 | 3 | 0.8547 | |
| mlin-fermikit | SNP | tv | map_siren | * | 81.3085 | 72.1446 | 93.1393 | 50.3116 | 33136 | 12794 | 33125 | 2440 | 2002 | 82.0492 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | homalt | 50.9001 | 43.3404 | 61.6541 | 74.8392 | 410 | 536 | 410 | 255 | 239 | 93.7255 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | het | 42.3276 | 27.0229 | 97.6103 | 84.4394 | 531 | 1434 | 531 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | * | 45.6242 | 32.2702 | 77.8329 | 80.3319 | 941 | 1975 | 941 | 268 | 239 | 89.1791 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | homalt | 50.5025 | 42.9029 | 61.3740 | 74.4739 | 402 | 535 | 402 | 253 | 237 | 93.6759 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | het | 41.9263 | 26.7010 | 97.5518 | 84.3317 | 518 | 1422 | 518 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | * | 45.2311 | 31.9223 | 77.5717 | 80.1107 | 920 | 1962 | 920 | 266 | 237 | 89.0977 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | homalt | 48.6787 | 40.8879 | 60.1375 | 71.4985 | 350 | 506 | 350 | 232 | 216 | 93.1034 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | het | 40.2130 | 25.3497 | 97.2103 | 81.1869 | 453 | 1334 | 453 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | * | 43.4641 | 30.3362 | 76.6221 | 76.8295 | 803 | 1844 | 803 | 245 | 216 | 88.1633 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | homalt | 47.1642 | 40.9326 | 55.6338 | 80.3051 | 79 | 114 | 79 | 63 | 60 | 95.2381 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | het | 33.2370 | 20.1049 | 95.8333 | 85.2399 | 115 | 457 | 115 | 5 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | * | 37.7799 | 25.3595 | 74.0458 | 82.9427 | 194 | 571 | 194 | 68 | 60 | 88.2353 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | homalt | 60.4772 | 53.3382 | 69.8227 | 60.3864 | 2205 | 1929 | 2205 | 953 | 885 | 92.8646 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 75.0000 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | het | 55.1935 | 38.4322 | 97.8827 | 71.7300 | 2824 | 4524 | 2820 | 61 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | * | 57.3730 | 43.7750 | 83.2258 | 66.7620 | 5035 | 6467 | 5031 | 1014 | 885 | 87.2781 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | homalt | 60.3616 | 53.1472 | 69.8423 | 60.3244 | 2170 | 1913 | 2170 | 937 | 869 | 92.7428 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 73.9130 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | het | 54.9832 | 38.2239 | 97.9130 | 71.6136 | 2772 | 4480 | 2768 | 59 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | * | 57.2030 | 43.5755 | 83.2323 | 66.6536 | 4948 | 6407 | 4944 | 996 | 869 | 87.2490 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | homalt | 59.5283 | 52.1287 | 69.3761 | 55.9108 | 2057 | 1889 | 2057 | 908 | 841 | 92.6211 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.4211 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | het | 53.4835 | 36.7982 | 97.8528 | 67.3388 | 2556 | 4390 | 2552 | 56 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | * | 56.0020 | 42.3295 | 82.7209 | 62.1223 | 4619 | 6293 | 4615 | 964 | 841 | 87.2407 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | homalt | 51.4655 | 44.9548 | 60.1815 | 60.0161 | 597 | 731 | 597 | 395 | 356 | 90.1266 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | het | 43.5638 | 28.0338 | 97.6716 | 69.5976 | 797 | 2046 | 797 | 19 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | * | 46.6065 | 33.3972 | 77.1018 | 65.0425 | 1394 | 2780 | 1394 | 414 | 356 | 85.9903 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | homalt | 64.9030 | 58.3635 | 73.0928 | 57.1933 | 3545 | 2529 | 3545 | 1305 | 1228 | 94.0996 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.9231 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | het | 61.6520 | 44.9730 | 97.9955 | 67.0300 | 4746 | 5807 | 4742 | 97 | 1 | 1.0309 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | * | 62.9750 | 49.8289 | 85.5434 | 62.7659 | 8300 | 8357 | 8296 | 1402 | 1229 | 87.6605 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | homalt | 64.7739 | 58.2018 | 73.0192 | 57.0520 | 3502 | 2515 | 3502 | 1294 | 1217 | 94.0495 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.3158 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | het | 61.4279 | 44.7328 | 98.0050 | 66.8730 | 4671 | 5771 | 4667 | 95 | 1 | 1.0526 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | * | 62.7919 | 49.6210 | 85.4813 | 62.5997 | 8182 | 8307 | 8178 | 1389 | 1218 | 87.6890 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | homalt | 63.9810 | 57.3208 | 72.3922 | 52.9173 | 3359 | 2501 | 3359 | 1281 | 1204 | 93.9891 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.9655 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | het | 60.2787 | 43.5216 | 98.0187 | 62.6103 | 4407 | 5719 | 4403 | 89 | 1 | 1.1236 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | * | 61.8003 | 48.5452 | 85.0126 | 58.2565 | 7775 | 8241 | 7771 | 1370 | 1205 | 87.9562 | |