PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2301-2350 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7512 | 99.6892 | 99.8133 | 54.3984 | 1604 | 5 | 1604 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9791 | 99.2182 | 98.7412 | 58.5355 | 2665 | 21 | 2667 | 34 | 4 | 11.7647 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2677 | 99.3946 | 99.1411 | 57.1258 | 4269 | 26 | 4271 | 37 | 6 | 16.2162 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.3248 | 99.2165 | 99.4333 | 71.0574 | 16842 | 133 | 16845 | 96 | 85 | 88.5417 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5730 | 15 | 0 | 15 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5155 | 98.1227 | 98.9115 | 70.9579 | 28173 | 539 | 28169 | 310 | 55 | 17.7419 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8172 | 98.5296 | 99.1064 | 71.0184 | 45030 | 672 | 45029 | 406 | 140 | 34.4828 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4700 | 99.4059 | 99.5342 | 55.3861 | 20079 | 120 | 20088 | 94 | 83 | 88.2979 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 79.7101 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2273 | 98.7916 | 99.6668 | 58.8530 | 34991 | 428 | 34997 | 117 | 50 | 42.7350 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3149 | 99.0149 | 99.6167 | 57.6636 | 55083 | 548 | 55098 | 212 | 134 | 63.2075 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.5237 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.7649 | 97.1817 | 98.3552 | 68.9461 | 2931 | 85 | 2930 | 49 | 11 | 22.4490 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.2384 | 97.7540 | 98.7277 | 67.1771 | 4657 | 107 | 4656 | 60 | 21 | 35.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.3138 | 6977 | 2 | 6977 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | func_cds | het | 99.9060 | 99.9552 | 99.8568 | 24.2730 | 11156 | 5 | 11156 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | * | 99.9367 | 99.9614 | 99.9119 | 23.5700 | 18143 | 7 | 18143 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | HG002compoundhet | homalt | 98.7381 | 99.4064 | 98.0787 | 35.7852 | 10718 | 64 | 10720 | 210 | 197 | 93.8095 | |
| ndellapenna-hhga | SNP | * | HG002compoundhet | hetalt | 99.3579 | 98.7239 | 100.0000 | 23.5400 | 851 | 11 | 851 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | HG002compoundhet | het | 98.0271 | 96.5510 | 99.5491 | 42.9549 | 13689 | 489 | 13687 | 62 | 36 | 58.0645 | |
| ndellapenna-hhga | SNP | * | HG002compoundhet | * | 98.3720 | 97.8158 | 98.9346 | 39.5539 | 25258 | 564 | 25258 | 272 | 233 | 85.6618 | |
| ndellapenna-hhga | SNP | * | HG002complexvar | homalt | 99.8626 | 99.8292 | 99.8960 | 19.9404 | 288081 | 493 | 288110 | 300 | 268 | 89.3333 | |
| ndellapenna-hhga | SNP | * | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | * | HG002complexvar | het | 99.7473 | 99.5353 | 99.9601 | 18.3091 | 463334 | 2163 | 463353 | 185 | 79 | 42.7027 | |
| ndellapenna-hhga | SNP | * | HG002complexvar | * | 99.7910 | 99.6474 | 99.9350 | 18.9550 | 751721 | 2660 | 751769 | 489 | 351 | 71.7791 | |
| ndellapenna-hhga | SNP | * | * | homalt | 99.9243 | 99.8838 | 99.9648 | 18.1151 | 1178790 | 1371 | 1178818 | 415 | 332 | 80.0000 | |
| ndellapenna-hhga | SNP | * | * | hetalt | 98.9643 | 98.7371 | 99.1926 | 47.1341 | 860 | 11 | 860 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | SNP | * | * | het | 99.8554 | 99.7670 | 99.9441 | 18.2036 | 1869221 | 4366 | 1869241 | 1046 | 128 | 12.2371 | |
| ndellapenna-hhga | SNP | * | * | * | 99.8818 | 99.8118 | 99.9519 | 18.1821 | 3048871 | 5748 | 3048919 | 1468 | 467 | 31.8120 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | tech_badpromoters | het | 92.0635 | 87.8788 | 96.6667 | 33.3333 | 29 | 4 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | * | 93.7063 | 93.0556 | 94.3662 | 43.6508 | 67 | 5 | 67 | 4 | 2 | 50.0000 | |
| mlin-fermikit | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | segdup | homalt | 98.3960 | 98.5485 | 98.2440 | 87.6277 | 3191 | 47 | 3189 | 57 | 49 | 85.9649 | |
| mlin-fermikit | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 7 | 0 | 7 | 0 | 0 | ||