PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1801-1850 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7279 | 99.5719 | 99.8844 | 68.5879 | 6048 | 26 | 6048 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | het | 98.8154 | 98.0195 | 99.6244 | 69.7483 | 10344 | 209 | 10344 | 39 | 16 | 41.0256 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | * | 99.1365 | 98.5592 | 99.7206 | 69.3660 | 16417 | 240 | 16417 | 46 | 22 | 47.8261 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7253 | 99.5679 | 99.8833 | 68.5442 | 5991 | 26 | 5991 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | het | 98.8271 | 98.0368 | 99.6302 | 69.6751 | 10237 | 205 | 10237 | 38 | 16 | 42.1053 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | * | 99.1430 | 98.5687 | 99.7239 | 69.3029 | 16253 | 236 | 16253 | 45 | 22 | 48.8889 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7180 | 99.5563 | 99.8802 | 65.8321 | 5834 | 26 | 5834 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | het | 98.8001 | 97.9854 | 99.6285 | 68.0340 | 9922 | 204 | 9922 | 37 | 16 | 43.2432 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | * | 99.1238 | 98.5327 | 99.7220 | 67.2834 | 15781 | 235 | 15781 | 44 | 22 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.5256 | 99.1896 | 99.8640 | 68.2316 | 2203 | 18 | 2203 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | * | 98.6916 | 97.8284 | 99.5702 | 72.2163 | 6487 | 144 | 6487 | 28 | 13 | 46.4286 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.7631 | 99.6130 | 99.9137 | 63.7862 | 9266 | 36 | 9266 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | het | 99.0340 | 98.4126 | 99.6632 | 64.7264 | 15685 | 253 | 15685 | 53 | 17 | 32.0755 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | * | 99.2907 | 98.8332 | 99.7525 | 64.4232 | 24988 | 295 | 24988 | 62 | 24 | 38.7097 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.7609 | 99.6093 | 99.9129 | 63.7805 | 9178 | 36 | 9178 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | het | 99.0369 | 98.4154 | 99.6662 | 64.6823 | 15527 | 250 | 15527 | 52 | 17 | 32.6923 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | * | 99.2917 | 98.8335 | 99.7541 | 64.3936 | 24741 | 292 | 24741 | 61 | 24 | 39.3443 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.7619 | 99.6130 | 99.9113 | 61.1747 | 9008 | 35 | 9008 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | het | 99.0304 | 98.3784 | 99.6911 | 62.9947 | 15167 | 250 | 15167 | 47 | 17 | 36.1702 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | * | 99.2885 | 98.8123 | 99.7692 | 62.3765 | 24210 | 291 | 24210 | 56 | 24 | 42.8571 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.6482 | 99.4280 | 99.8694 | 61.5639 | 3824 | 22 | 3824 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | het | 98.6590 | 97.7984 | 99.5349 | 67.9349 | 7063 | 159 | 7063 | 33 | 13 | 39.3939 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | * | 98.9920 | 98.3490 | 99.6435 | 65.9868 | 10901 | 183 | 10901 | 39 | 17 | 43.5897 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7712 | 99.7712 | 99.7712 | 36.2974 | 1308 | 3 | 1308 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3658 | 98.9242 | 99.8113 | 35.2869 | 2115 | 23 | 2116 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5204 | 99.2464 | 99.7960 | 35.7063 | 3424 | 26 | 3425 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.0617 | 5 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||