PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1601-1650 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l150_m0_e0 | homalt | 74.2731 | 59.5011 | 98.8021 | 79.7981 | 2433 | 1656 | 2392 | 29 | 29 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m0_e0 | het | 75.9917 | 64.6851 | 92.0882 | 93.9068 | 5136 | 2804 | 5098 | 438 | 367 | 83.7900 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | * | 75.4274 | 62.9239 | 94.1324 | 92.2685 | 7571 | 4461 | 7492 | 467 | 396 | 84.7966 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | homalt | 83.7240 | 72.4219 | 99.2062 | 67.7495 | 12697 | 4835 | 12498 | 100 | 99 | 99.0000 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m2_e1 | het | 84.1292 | 74.4636 | 96.6784 | 86.6172 | 22071 | 7569 | 21888 | 752 | 615 | 81.7819 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | * | 83.9768 | 73.7003 | 97.5835 | 83.0865 | 34788 | 12414 | 34406 | 852 | 714 | 83.8028 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | homalt | 83.6128 | 72.2475 | 99.2214 | 67.7362 | 12553 | 4822 | 12362 | 97 | 96 | 98.9691 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m2_e0 | het | 84.0186 | 74.3127 | 96.6407 | 86.6277 | 21787 | 7531 | 21605 | 751 | 614 | 81.7577 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | * | 83.8659 | 73.5398 | 97.5657 | 83.0916 | 34360 | 12363 | 33987 | 848 | 710 | 83.7264 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | homalt | 83.2331 | 71.6711 | 99.2430 | 64.3421 | 12116 | 4789 | 11930 | 91 | 90 | 98.9011 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m1_e0 | het | 83.6399 | 73.7567 | 96.5816 | 86.1149 | 20941 | 7451 | 20766 | 735 | 611 | 83.1293 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | * | 83.4865 | 72.9742 | 97.5374 | 82.2302 | 33077 | 12250 | 32716 | 826 | 701 | 84.8668 | |
| qzeng-custom | SNP | * | map_l125_m0_e0 | homalt | 77.7882 | 64.0644 | 98.9949 | 72.2676 | 4300 | 2412 | 4235 | 43 | 42 | 97.6744 | |
| qzeng-custom | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 96.6942 | 4 | 5 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m0_e0 | het | 78.6100 | 67.5932 | 93.9173 | 91.2651 | 8560 | 4104 | 8492 | 550 | 460 | 83.6364 | |
| qzeng-custom | SNP | * | map_l125_m0_e0 | * | 78.3239 | 66.3606 | 95.5494 | 88.8093 | 12864 | 6521 | 12731 | 593 | 502 | 84.6543 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | homalt | 87.9899 | 78.9574 | 99.3560 | 60.6459 | 21947 | 5849 | 21600 | 140 | 134 | 95.7143 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e1 | het | 87.9932 | 79.9949 | 97.7685 | 81.4422 | 37516 | 9382 | 37154 | 848 | 656 | 77.3585 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | * | 87.9879 | 79.6031 | 98.3471 | 77.0361 | 59493 | 15244 | 58784 | 988 | 790 | 79.9595 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | homalt | 87.8998 | 78.8141 | 99.3533 | 60.6693 | 21692 | 5831 | 21356 | 139 | 133 | 95.6835 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e0 | het | 87.9050 | 79.8638 | 97.7467 | 81.4691 | 37056 | 9343 | 36699 | 846 | 656 | 77.5414 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | * | 87.8989 | 79.4670 | 98.3325 | 77.0630 | 58777 | 15187 | 58084 | 985 | 789 | 80.1015 | |
| qzeng-custom | SNP | * | map_l100_m1_e0 | homalt | 87.6866 | 78.4579 | 99.3758 | 57.2534 | 21186 | 5817 | 20855 | 131 | 129 | 98.4733 | |
| qzeng-custom | SNP | * | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m1_e0 | het | 87.7038 | 79.5123 | 97.7769 | 80.6669 | 36066 | 9293 | 35714 | 812 | 655 | 80.6650 | |
| qzeng-custom | SNP | * | map_l100_m1_e0 | * | 87.6931 | 79.1127 | 98.3611 | 75.8509 | 57280 | 15123 | 56597 | 943 | 784 | 83.1389 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m0_e0 | het | 82.7631 | 72.8602 | 95.7815 | 86.9859 | 15450 | 5755 | 15326 | 675 | 562 | 83.2593 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | * | 82.6366 | 72.0228 | 96.9194 | 83.3401 | 23653 | 9188 | 23407 | 744 | 630 | 84.6774 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 96.9697 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 98.3146 | 6 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.5882 | 66.6667 | 75.0000 | 98.1043 | 6 | 3 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6334 | 99.4522 | 99.8153 | 34.5977 | 2723 | 15 | 2702 | 5 | 4 | 80.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2828 | 99.0685 | 99.4980 | 45.3418 | 4573 | 43 | 4559 | 23 | 2 | 8.6957 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4064 | 99.1978 | 99.6159 | 41.7997 | 7296 | 59 | 7261 | 28 | 6 | 21.4286 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||