PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1351-1400 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | HG002compoundhet | het | 97.5388 | 97.4321 | 97.6458 | 58.3399 | 4553 | 120 | 5641 | 136 | 28 | 20.5882 | |
| qzeng-custom | SNP | tv | HG002compoundhet | * | 98.0856 | 98.0500 | 98.1212 | 53.9878 | 8749 | 174 | 9244 | 177 | 64 | 36.1582 | |
| qzeng-custom | SNP | tv | HG002complexvar | homalt | 99.2146 | 98.6185 | 99.8179 | 23.3623 | 93797 | 1314 | 91543 | 167 | 141 | 84.4311 | |
| qzeng-custom | SNP | tv | HG002complexvar | hetalt | 97.3511 | 95.1613 | 99.6441 | 38.9130 | 295 | 15 | 280 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002complexvar | het | 99.0228 | 98.2997 | 99.7567 | 23.1864 | 148171 | 2563 | 146790 | 358 | 101 | 28.2123 | |
| qzeng-custom | SNP | tv | HG002complexvar | * | 99.0948 | 98.4189 | 99.7800 | 23.2771 | 242263 | 3892 | 238613 | 526 | 243 | 46.1977 | |
| qzeng-custom | SNP | tv | * | homalt | 99.5964 | 99.2947 | 99.8999 | 20.4155 | 374463 | 2660 | 372209 | 373 | 242 | 64.8794 | |
| qzeng-custom | SNP | tv | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | tv | * | het | 99.3391 | 99.1721 | 99.5067 | 29.7409 | 586805 | 4899 | 585578 | 2903 | 302 | 10.4030 | |
| qzeng-custom | SNP | tv | * | * | 99.4379 | 99.2180 | 99.6588 | 26.4392 | 962115 | 7583 | 958619 | 3282 | 549 | 16.7276 | |
| qzeng-custom | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 41 | 0 | 40 | 0 | 0 | ||
| qzeng-custom | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | * | 99.4083 | 100.0000 | 98.8235 | 44.4444 | 85 | 0 | 84 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | segdup | homalt | 99.3042 | 99.2005 | 99.4081 | 87.0359 | 7445 | 60 | 7390 | 44 | 39 | 88.6364 | |
| qzeng-custom | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | segdup | het | 98.3988 | 98.8030 | 97.9978 | 93.2216 | 11886 | 144 | 11845 | 242 | 6 | 2.4793 | |
| qzeng-custom | SNP | ti | segdup | * | 98.7450 | 98.9558 | 98.5351 | 91.7233 | 19333 | 204 | 19237 | 286 | 45 | 15.7343 | |
| qzeng-custom | SNP | ti | map_siren | homalt | 93.0187 | 87.2719 | 99.5758 | 47.6263 | 33090 | 4826 | 32626 | 139 | 121 | 87.0504 | |
| qzeng-custom | SNP | ti | map_siren | hetalt | 86.0000 | 75.4386 | 100.0000 | 84.0467 | 43 | 14 | 41 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_siren | het | 92.2591 | 86.5538 | 98.7696 | 67.2335 | 53994 | 8388 | 53703 | 669 | 449 | 67.1151 | |
| qzeng-custom | SNP | ti | map_siren | * | 92.5421 | 86.8188 | 99.0732 | 61.8902 | 87127 | 13228 | 86370 | 808 | 570 | 70.5446 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | homalt | 74.0705 | 59.2551 | 98.7643 | 89.0815 | 1050 | 722 | 1039 | 13 | 12 | 92.3077 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 97.3684 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e1 | het | 74.8760 | 64.0800 | 90.0468 | 96.4938 | 2114 | 1185 | 2117 | 234 | 196 | 83.7607 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | * | 74.5851 | 62.3719 | 92.7460 | 95.5643 | 3166 | 1910 | 3158 | 247 | 208 | 84.2105 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | homalt | 73.9407 | 59.0623 | 98.8395 | 89.1089 | 1033 | 716 | 1022 | 12 | 11 | 91.6667 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 97.3333 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e0 | het | 74.6630 | 63.8291 | 89.9265 | 96.4842 | 2077 | 1177 | 2080 | 233 | 195 | 83.6910 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | * | 74.3996 | 62.1406 | 92.6844 | 95.5558 | 3112 | 1896 | 3104 | 245 | 206 | 84.0816 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | homalt | 72.8401 | 57.4984 | 99.3478 | 88.5158 | 924 | 683 | 914 | 6 | 6 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 98.5294 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m1_e0 | het | 73.3752 | 62.4326 | 88.9688 | 96.5528 | 1853 | 1115 | 1855 | 230 | 193 | 83.9130 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | * | 73.1661 | 60.6683 | 92.1490 | 95.6157 | 2778 | 1801 | 2770 | 236 | 199 | 84.3220 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | homalt | 67.7742 | 51.3761 | 99.5475 | 94.9738 | 224 | 212 | 220 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | map_l250_m0_e0 | het | 67.5985 | 56.9593 | 83.1250 | 98.4261 | 532 | 402 | 532 | 108 | 85 | 78.7037 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | * | 67.6335 | 55.1825 | 87.3403 | 98.0910 | 756 | 614 | 752 | 109 | 86 | 78.8991 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | homalt | 80.1365 | 67.1910 | 99.2610 | 72.9055 | 5169 | 2524 | 5104 | 38 | 38 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e1 | het | 80.5961 | 69.6581 | 95.6089 | 89.9144 | 9066 | 3949 | 9036 | 415 | 349 | 84.0964 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | * | 80.4222 | 68.7352 | 96.8977 | 87.0560 | 14244 | 6479 | 14149 | 453 | 387 | 85.4305 | |
| qzeng-custom | SNP | ti | map_l150_m2_e0 | homalt | 79.9782 | 66.9643 | 99.2706 | 72.9194 | 5100 | 2516 | 5036 | 37 | 37 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6230 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e0 | het | 80.5235 | 69.5753 | 95.5605 | 89.8900 | 8962 | 3919 | 8933 | 415 | 349 | 84.0964 | |
| qzeng-custom | SNP | ti | map_l150_m2_e0 | * | 80.3185 | 68.5989 | 96.8676 | 87.0371 | 14071 | 6441 | 13978 | 452 | 386 | 85.3982 | |