PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
asubramanian-gatkINDEL*map_l250_m1_e0het
83.2020
83.1579
83.2461
97.3234
15832159323
9.3750
asubramanian-gatkINDEL*map_l250_m1_e0hetalt
90.9091
83.3333
100.0000
97.4026
51600
asubramanian-gatkINDEL*map_l250_m1_e0homalt
92.1569
86.2385
98.9474
95.6262
94159410
0.0000
asubramanian-gatkINDEL*map_l250_m2_e0*
86.7966
84.2900
89.4569
99.1194
27952280333
9.0909
asubramanian-gatkINDEL*map_l250_m2_e0het
83.9329
83.3333
84.5411
97.4454
17535175323
9.3750
asubramanian-gatkINDEL*map_l250_m2_e0hetalt
90.9091
83.3333
100.0000
97.8723
51600
asubramanian-gatkINDEL*map_l250_m2_e0homalt
92.0930
86.0870
99.0000
95.9920
99169910
0.0000
asubramanian-gatkINDEL*map_l250_m2_e1*
86.7031
84.0841
89.4904
99.1381
28053281333
9.0909
asubramanian-gatkINDEL*map_l250_m2_e1het
83.7321
82.9384
84.5411
97.5144
17536175323
9.3750
asubramanian-gatkINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.9239
51600
asubramanian-gatkINDEL*map_l250_m2_e1homalt
92.1659
86.2069
99.0099
96.0531
1001610010
0.0000
asubramanian-gatkINDEL*map_siren*
93.9319
90.2024
97.9830
94.1412
6684726670413823
16.6667
asubramanian-gatkINDEL*map_sirenhet
91.9143
87.2227
97.1393
86.6717
3932576393911614
12.0690
asubramanian-gatkINDEL*map_sirenhetalt
96.0386
93.1174
99.1489
87.5133
2301723320
0.0000
asubramanian-gatkINDEL*map_sirenhomalt
97.0575
94.9906
99.2163
82.1825
25221332532209
45.0000
asubramanian-gatkINDEL*segdup*
98.4487
98.0047
98.8968
98.3850
25055125102810
35.7143
asubramanian-gatkINDEL*segduphet
98.2193
97.7490
98.6942
95.9225
1433331436192
10.5263
asubramanian-gatkINDEL*segduphetalt
95.6238
92.3077
99.1870
94.8211
1201012211
100.0000
asubramanian-gatkINDEL*segduphomalt
99.1667
99.1667
99.1667
93.6609
952895287
87.5000
asubramanian-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9985
10200
asubramanian-gatkINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9932
10200
asubramanian-gatkINDEL*segdupwithalthetalt
0.0000
100.0000
00000
asubramanian-gatkINDEL*segdupwithalthomalt
0.0000
100.0000
00000
asubramanian-gatkINDEL*tech_badpromoters*
97.2973
94.7368
100.0000
69.0987
7247200
asubramanian-gatkINDEL*tech_badpromotershet
98.7013
97.4359
100.0000
53.6585
3813800
asubramanian-gatkINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
asubramanian-gatkINDEL*tech_badpromotershomalt
95.2381
90.9091
100.0000
60.5263
3033000
asubramanian-gatkINDELC16_PLUS**
0.0000
0.0000
87.7138
000790
0.0000
asubramanian-gatkINDELC16_PLUS*het
0.0000
0.0000
89.8048
000470
0.0000
asubramanian-gatkINDELC16_PLUS*hetalt
0.0000
0.0000
54.5455
00050
0.0000
asubramanian-gatkINDELC16_PLUS*homalt
0.0000
0.0000
84.2105
000270
0.0000
asubramanian-gatkINDELC16_PLUSHG002complexvar*
0.0000
0.0000
80.4878
000320
0.0000
asubramanian-gatkINDELC16_PLUSHG002complexvarhet
0.0000
0.0000
75.6522
000280
0.0000
asubramanian-gatkINDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
50.0000
00010
0.0000
asubramanian-gatkINDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
93.6170
00030
0.0000
asubramanian-gatkINDELC16_PLUSHG002compoundhet*
0.0000
0.0000
48.1481
000280
0.0000
asubramanian-gatkINDELC16_PLUSHG002compoundhethet
0.0000
0.0000
44.8276
000160
0.0000
asubramanian-gatkINDELC16_PLUSHG002compoundhethetalt
0.0000
0.0000
20.0000
00040
0.0000
asubramanian-gatkINDELC16_PLUSHG002compoundhethomalt
0.0000
0.0000
60.0000
00080
0.0000
asubramanian-gatkINDELC16_PLUSdecoy*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSdecoyhet
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSdecoyhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSfunc_cds*
0.0000
100.0000
00000