PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85601-85650 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 75.5627 | 2 | 1 | 0 | 304 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 75.7212 | 2 | 1 | 0 | 202 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 75.5000 | 0 | 0 | 0 | 98 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 76.4158 | 0 | 1 | 0 | 304 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 77.9412 | 0 | 1 | 0 | 195 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 73.3333 | 0 | 0 | 0 | 104 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.3043 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 82.3529 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7178 | 94.6429 | 96.8174 | 68.4294 | 583 | 33 | 578 | 19 | 17 | 89.4737 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5777 | 97.5610 | 95.6140 | 88.7352 | 160 | 4 | 109 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.0937 | 93.1429 | 97.1279 | 35.7383 | 326 | 24 | 372 | 11 | 10 | 90.9091 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.0396 | 95.0980 | 97.0000 | 64.6643 | 97 | 5 | 97 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.1246 | 96.8153 | 97.4359 | 68.8623 | 152 | 5 | 152 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.2727 | 93.4426 | 93.1034 | 80.4054 | 57 | 4 | 54 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 24.2857 | 50 | 1 | 53 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 45 | 0 | 45 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 67.8832 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 44.4444 | 23 | 2 | 25 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 80.0000 | 78.5714 | 81.4815 | 97.3188 | 22 | 6 | 22 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.3582 | 78.9474 | 77.7778 | 97.5577 | 15 | 4 | 14 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5926 | 3 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6852 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.2093 | 86.2069 | 88.2353 | 95.4955 | 75 | 12 | 75 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.9211 | 86.9565 | 82.9787 | 96.4952 | 40 | 6 | 39 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 87.5829 | 80.7692 | 95.6522 | 79.6460 | 21 | 5 | 22 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.5358 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.1508 | 86.6667 | 87.6404 | 95.9118 | 78 | 12 | 78 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.4646 | 87.5000 | 81.6327 | 96.8161 | 42 | 6 | 40 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 87.6588 | 80.7692 | 95.8333 | 80.1653 | 21 | 5 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9052 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.5000 | 86.5979 | 88.4211 | 95.7342 | 84 | 13 | 84 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.3739 | 88.2353 | 82.6923 | 96.6984 | 45 | 6 | 43 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 87.3950 | 80.0000 | 96.2963 | 79.2308 | 24 | 6 | 26 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9349 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |