PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
84001-84050 / 86044 show all | |||||||||||||||
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.4202 | 43.0804 | 60.7748 | 52.4011 | 772 | 1020 | 753 | 486 | 332 | 68.3128 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 55.3043 | 53.2020 | 57.5796 | 52.8812 | 324 | 285 | 452 | 333 | 230 | 69.0691 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 19.7704 | 0.0000 | 0.0000 | 155 | 629 | 0 | 0 | 0 | ||
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.6845 | 73.4336 | 66.2996 | 51.5475 | 293 | 106 | 301 | 153 | 102 | 66.6667 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.5882 | 23.0769 | 45.3488 | 45.7413 | 39 | 130 | 78 | 94 | 74 | 78.7234 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 9.1116 | 0.0000 | 0.0000 | 40 | 399 | 0 | 0 | 0 | ||
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 53.9587 | 55.9055 | 52.1429 | 46.7681 | 71 | 56 | 73 | 67 | 51 | 76.1194 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 83.8725 | 78.8462 | 89.5833 | 67.1233 | 41 | 11 | 43 | 5 | 2 | 40.0000 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.1971 | 86.9565 | 89.4737 | 77.1084 | 20 | 3 | 17 | 2 | 1 | 50.0000 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6562 | 36.7647 | 76.4706 | 96.4620 | 25 | 43 | 26 | 8 | 7 | 87.5000 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 48.2759 | 31.8182 | 100.0000 | 91.5730 | 14 | 30 | 15 | 0 | 0 | ||
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.7059 | 73.3333 | 57.8947 | 97.5734 | 11 | 4 | 11 | 8 | 7 | 87.5000 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.7848 | 41.9187 | 67.7249 | 51.1628 | 402 | 557 | 384 | 183 | 140 | 76.5027 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 55.4070 | 49.8753 | 62.3188 | 47.9245 | 200 | 201 | 258 | 156 | 121 | 77.5641 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 22.5610 | 0.0000 | 0.0000 | 74 | 254 | 0 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6835 | 6 | 1 | 6 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 95.0454 | 91.7808 | 98.5507 | 94.0311 | 67 | 6 | 68 | 1 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 96.1039 | 94.8718 | 97.3684 | 95.3939 | 37 | 2 | 37 | 1 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.2088 | 7 | 1 | 8 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 93.8776 | 88.4615 | 100.0000 | 90.4167 | 23 | 3 | 23 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.9446 | 91.4634 | 98.7013 | 94.0310 | 75 | 7 | 76 | 1 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 96.7033 | 95.6522 | 97.7778 | 95.1246 | 44 | 2 | 44 | 1 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.1569 | 7 | 1 | 8 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 90.9434 | 24 | 4 | 24 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 94.4860 | 90.5882 | 98.7342 | 94.0242 | 77 | 8 | 78 | 1 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 96.7742 | 95.7447 | 97.8261 | 95.1426 | 45 | 2 | 45 | 1 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.4528 | 7 | 2 | 8 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 92.5926 | 86.2069 | 100.0000 | 90.7063 | 25 | 4 | 25 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.4436 | 4 | 0 | 4 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.7179 | 1 | 1 | 1 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 90.9091 | 83.3333 | 100.0000 | 97.6366 | 15 | 3 | 16 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 97.9592 | 10 | 1 | 10 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2264 | 1 | 1 | 2 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.0149 | 4 | 1 | 4 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 92.6829 | 86.3636 | 100.0000 | 97.4392 | 19 | 3 | 20 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 96.2963 | 92.8571 | 100.0000 | 97.6991 | 13 | 1 | 13 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8254 | 1 | 1 | 2 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7320 | 5 | 1 | 5 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 92.6829 | 86.3636 | 100.0000 | 97.5093 | 19 | 3 | 20 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 97.7625 | 13 | 1 | 13 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.9231 | 1 | 1 | 2 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.8153 | 5 | 1 | 5 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | map_siren | * | 94.9597 | 92.5344 | 97.5155 | 86.4857 | 471 | 38 | 471 | 12 | 3 | 25.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_siren | het | 94.1539 | 92.1429 | 96.2547 | 88.8191 | 258 | 22 | 257 | 10 | 2 | 20.0000 |