PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83651-83700 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9921 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | * | 88.2353 | 78.9474 | 100.0000 | 40.0000 | 15 | 4 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 22.2222 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 50.0000 | 8 | 1 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | * | 67.2100 | 61.4480 | 74.1646 | 48.0426 | 16033 | 10059 | 16202 | 5644 | 4329 | 76.7009 | |
| anovak-vg | INDEL | D6_15 | * | het | 76.4820 | 81.7202 | 71.8750 | 45.3746 | 9473 | 2119 | 11523 | 4509 | 3518 | 78.0217 | |
| anovak-vg | INDEL | D6_15 | * | hetalt | 0.0000 | 24.6269 | 0.0000 | 0.0000 | 2013 | 6161 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | * | 72.7472 | 67.2954 | 79.1602 | 52.2024 | 3568 | 1734 | 3582 | 943 | 676 | 71.6861 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | het | 77.7392 | 75.0641 | 80.6119 | 50.1246 | 2342 | 778 | 2582 | 621 | 443 | 71.3366 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 25.8638 | 0.0000 | 0.0000 | 262 | 751 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | HG002complexvar | homalt | 78.9062 | 82.4636 | 75.6430 | 56.5846 | 964 | 205 | 1000 | 322 | 233 | 72.3602 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | * | 33.7576 | 27.6935 | 43.2221 | 33.8439 | 2501 | 6530 | 2707 | 3556 | 2531 | 71.1755 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | het | 52.4874 | 55.7243 | 49.6058 | 30.8102 | 477 | 379 | 2580 | 2621 | 1862 | 71.0416 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 24.5859 | 0.0000 | 0.0000 | 2004 | 6147 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | HG002compoundhet | homalt | 20.9157 | 83.3333 | 11.9586 | 45.5385 | 20 | 4 | 127 | 935 | 669 | 71.5508 | |
| anovak-vg | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9147 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8978 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D6_15 | func_cds | * | 79.0123 | 74.4186 | 84.2105 | 49.3333 | 32 | 11 | 32 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | func_cds | het | 81.3559 | 82.7586 | 80.0000 | 46.4286 | 24 | 5 | 24 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 57.8947 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 30.5317 | 23.4920 | 43.5957 | 47.5189 | 923 | 3006 | 936 | 1211 | 1021 | 84.3105 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 44.0797 | 45.6816 | 42.5864 | 46.2713 | 439 | 522 | 764 | 1030 | 885 | 85.9223 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 14.1589 | 0.0000 | 0.0000 | 335 | 2031 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.8267 | 24.7508 | 48.7252 | 53.0585 | 149 | 453 | 172 | 181 | 136 | 75.1381 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6301 | 3 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2143 | 3 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 55.4286 | 49.6853 | 62.6733 | 53.8178 | 7973 | 8074 | 8093 | 4820 | 3647 | 75.6639 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 65.3950 | 71.2167 | 60.4531 | 49.7479 | 3986 | 1611 | 5844 | 3823 | 2953 | 77.2430 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 27.2460 | 0.0000 | 0.0000 | 1856 | 4956 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.4822 | 58.5761 | 69.2853 | 62.7923 | 2131 | 1507 | 2249 | 997 | 694 | 69.6088 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 51.2305 | 44.8305 | 59.7622 | 50.2699 | 7922 | 9749 | 8093 | 5449 | 4223 | 77.5005 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.0445 | 67.3110 | 57.5423 | 47.2192 | 3935 | 1911 | 5947 | 4388 | 3469 | 79.0565 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 24.4075 | 0.0000 | 0.0000 | 1967 | 6092 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 59.5457 | 53.6378 | 66.9161 | 58.0784 | 2020 | 1746 | 2146 | 1061 | 754 | 71.0650 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 62.0854 | 55.5024 | 70.4403 | 70.2247 | 116 | 93 | 112 | 47 | 28 | 59.5745 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.9850 | 66.9291 | 73.3333 | 68.5864 | 85 | 42 | 88 | 32 | 20 | 62.5000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 20.5128 | 0.0000 | 0.0000 | 8 | 31 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.2317 | 53.4884 | 61.5385 | 74.3421 | 23 | 20 | 24 | 15 | 8 | 53.3333 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5507 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.0769 | 2 | 0 | 1 | 1 | 1 | 100.0000 | |