PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2001-2050 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4518 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4947 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6150 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5798 | 99.5507 | 99.6089 | 75.0780 | 5096 | 23 | 5094 | 20 | 10 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5829 | 99.5667 | 99.5991 | 76.3025 | 2987 | 13 | 2981 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0429 | 96.5665 | 99.5652 | 76.2642 | 225 | 8 | 229 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.6774 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7930 | 99.8068 | 99.7792 | 75.7754 | 3616 | 7 | 3616 | 8 | 3 | 37.5000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8362 | 99.8597 | 99.8128 | 76.4258 | 2135 | 3 | 2133 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.9080 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.1369 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.0371 | 93.4243 | 94.6580 | 64.2218 | 5683 | 400 | 5564 | 314 | 298 | 94.9045 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4480 | 96.6024 | 92.3875 | 77.6266 | 2104 | 74 | 1869 | 154 | 140 | 90.9091 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.6552 | 88.4686 | 99.4878 | 37.7483 | 2409 | 314 | 2525 | 13 | 13 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.6375 | 98.9848 | 88.8383 | 60.2115 | 1170 | 12 | 1170 | 147 | 145 | 98.6395 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.6838 | 97.4223 | 97.9467 | 56.1751 | 36925 | 977 | 36731 | 770 | 739 | 95.9740 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1423 | 98.9601 | 97.3379 | 67.2353 | 14465 | 152 | 14077 | 385 | 358 | 92.9870 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8059 | 94.1587 | 99.6062 | 31.3760 | 12960 | 804 | 13154 | 52 | 51 | 98.0769 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1709 | 99.7794 | 96.6134 | 55.6813 | 9500 | 21 | 9500 | 333 | 330 | 99.0991 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3493 | 98.1589 | 98.5404 | 55.2323 | 31403 | 589 | 31326 | 464 | 446 | 96.1207 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7180 | 99.3371 | 98.1066 | 65.6768 | 12438 | 83 | 12280 | 237 | 222 | 93.6709 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5419 | 95.5335 | 99.6365 | 30.2678 | 10609 | 496 | 10690 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8291 | 99.8805 | 97.7996 | 55.4001 | 8356 | 10 | 8356 | 188 | 186 | 98.9362 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.8510 | 97.6024 | 98.1008 | 61.8066 | 42296 | 1039 | 42098 | 815 | 759 | 93.1288 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2925 | 98.9506 | 97.6432 | 71.0801 | 17632 | 187 | 17235 | 416 | 367 | 88.2212 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.7892 | 94.1206 | 99.6136 | 34.1069 | 13207 | 825 | 13406 | 52 | 51 | 98.0769 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3940 | 99.7649 | 97.0603 | 61.7981 | 11457 | 27 | 11457 | 347 | 341 | 98.2709 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6446 | 98.9272 | 98.3637 | 73.5579 | 30153 | 327 | 29696 | 494 | 401 | 81.1741 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0426 | 94.5944 | 99.6209 | 40.6185 | 15802 | 903 | 16029 | 61 | 60 | 98.3607 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7705 | 99.7193 | 97.8396 | 67.4095 | 18115 | 51 | 18115 | 400 | 388 | 97.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5463 | 98.3740 | 98.7193 | 52.5147 | 35997 | 595 | 35921 | 466 | 435 | 93.3476 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9118 | 99.3147 | 98.5122 | 62.5969 | 15652 | 108 | 15494 | 234 | 208 | 88.8889 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.4632 | 95.4749 | 99.5360 | 33.1882 | 10001 | 474 | 10083 | 47 | 46 | 97.8723 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0520 | 99.8745 | 98.2429 | 45.7715 | 10344 | 13 | 10344 | 185 | 181 | 97.8378 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8405 | 84.9119 | 86.7896 | 57.5804 | 1784 | 317 | 1695 | 258 | 252 | 97.6744 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5406 | 92.6531 | 66.6667 | 80.5140 | 454 | 36 | 278 | 139 | 134 | 96.4029 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.4680 | 77.9553 | 99.6251 | 31.2943 | 976 | 276 | 1063 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5181 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7134 | 99.9043 | 58.1701 | 28179 | 81 | 28181 | 27 | 15 | 55.5556 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7775 | 99.6287 | 99.9267 | 58.5881 | 16368 | 61 | 16366 | 12 | 1 | 8.3333 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2046 | 97.0093 | 99.4297 | 73.5811 | 519 | 16 | 523 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9292 | 99.9646 | 99.8938 | 56.3468 | 11292 | 4 | 11292 | 12 | 11 | 91.6667 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.7563 | 95.1613 | 94.3548 | 99.9176 | 118 | 6 | 117 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5252 | 93.1034 | 91.9540 | 99.8905 | 81 | 6 | 80 | 7 | 0 | 0.0000 | |