PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
851-900 / 86044 show all
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
20.6568
0.0000
0.0000
195749000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
67.4506
68.3983
66.5289
66.7811
316146322162105
64.8148
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.4634
56.6917
58.2564
53.1385
7545761009723533
73.7206
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
16.7981
0.0000
0.0000
2771372000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
70.6515
66.8199
74.9493
62.1061
727361739247164
66.3968
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
16.4164
0.0000
0.0000
3171614000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.6464
66.6133
75.1993
63.7444
832417849280193
68.9286
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
55.3043
53.2020
57.5796
52.8812
324285452333230
69.0691
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
19.7704
0.0000
0.0000
155629000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
69.6845
73.4336
66.2996
51.5475
293106301153102
66.6667
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
28.7100
20.4082
48.3974
46.2069
150585151161125
77.6398
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
30.5882
23.0769
45.3488
45.7413
39130789474
78.7234
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
9.1116
0.0000
0.0000
40399000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
53.9587
55.9055
52.1429
46.7681
7156736751
76.1194
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
79.3685
71.2644
89.5522
70.7424
62256073
42.8571
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
83.8725
78.8462
89.5833
67.1233
41114352
40.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
8.3333
0.0000
0.0000
111000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
88.1971
86.9565
89.4737
77.1084
2031721
50.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
49.6562
36.7647
76.4706
96.4620
25432687
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
48.2759
31.8182
100.0000
91.5730
14301500
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
09000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
64.7059
73.3333
57.8947
97.5734
1141187
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.7848
41.9187
67.7249
51.1628
402557384183140
76.5027
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
55.4070
49.8753
62.3188
47.9245
200201258156121
77.5641
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
22.5610
0.0000
0.0000
74254000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
66.4196
55.6522
82.3529
58.1967
1281021262719
70.3704
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
26.5368
18.6688
45.8678
43.7209
115501111131110
83.9695
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
31.2083
26.2195
38.5417
39.6226
431217411898
83.0508
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
11.4286
0.0000
0.0000
40310000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
44.0640
31.3725
74.0000
55.3571
3270371312
92.3077
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
54.9995
46.4968
67.3077
47.2081
7384703426
76.4706
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
57.5634
52.4590
63.7681
43.4426
3229442520
80.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
25.4902
0.0000
0.0000
1338000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
67.7209
62.2222
74.2857
53.3333
28172696
66.6667
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
29.8913
21.7391
47.8261
39.4737
103611129
75.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
40.0000
50.0000
33.3333
42.3077
445107
70.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
025000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
57.1429
46.1538
75.0000
33.3333
67622
100.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000