PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
raldana-dualsentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
raldana-dualsentieonSNPtvmap_l150_m1_e0hetalt
94.7368
90.0000
100.0000
74.2857
1821800
ckim-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
rpoplin-dv42SNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-isaacSNPtvmap_l150_m1_e0hetalt
57.1429
40.0000
100.0000
85.7143
812800
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
ckim-vqsrSNPtimap_l150_m1_e0hetalt
42.1053
26.6667
100.0000
96.1538
411400
dgrover-gatkSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
dgrover-gatkSNPtvdecoyhetalt
0.0000
100.0000
00000
egarrison-hhgaSNP*map_l100_m1_e0hetalt
95.0000
92.6829
97.4359
77.5862
3833811
100.0000
egarrison-hhgaSNPtimap_sirenhetalt
95.4955
92.9825
98.1481
75.0000
5345311
100.0000
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
gduggal-bwafbSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
86.1538
90900
gduggal-bwafbSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
gduggal-bwaplatSNP*map_l125_m2_e1hetalt
66.6667
50.0000
100.0000
93.3628
15151500
gduggal-bwaplatSNPtvHG002compoundhethetalt
96.3319
92.9234
100.0000
22.7493
8016179800
gduggal-bwavardSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardSNPtimap_l250_m1_e0hetalt
0.0000
0.0000
0.0000
04000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.2381
40400
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatSNPtimap_l250_m1_e0hetalt
85.7143
75.0000
100.0000
95.0000
31300
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtimap_l250_m1_e0hetalt
0.0000
0.0000
0.0000
04000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ghariani-varprowlSNPtimap_l125_m1_e0hetalt
0.0000
0.0000
0.0000
024000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
hfeng-pmm1SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3SNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jlack-gatkSNPtimap_l250_m2_e0hetalt
80.0000
80.0000
80.0000
94.0476
41411
100.0000
jli-customSNPtidecoyhetalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7711
1201200