PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85301-85350 / 86044 show all
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7691
99.9184
99.6202
33.3544
734967345283
10.7143
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6756
99.9350
99.4176
34.7502
461334609272
7.4074
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.7143
90900
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8529
70700
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.2973
20200
bgallagher-sentieonSNP*map_l100_m0_e0*
99.1340
99.3545
98.9146
69.7273
326292123262535860
16.7598
bgallagher-sentieonSNP*map_l100_m0_e0het
98.8545
99.3162
98.3971
73.2385
210601452105634349
14.2857
bgallagher-sentieonSNP*map_l100_m0_e0hetalt
96.7742
93.7500
100.0000
68.7500
1511500
bgallagher-sentieonSNP*map_l100_m0_e0homalt
99.6507
99.4320
99.8703
60.0283
1155466115541511
73.3333
bgallagher-sentieonSNP*map_l100_m1_e0*
99.4317
99.5636
99.3001
65.4224
720873167207650881
15.9449
bgallagher-sentieonSNP*map_l100_m1_e0het
99.2217
99.5084
98.9366
68.7750
451362234512548563
12.9897
bgallagher-sentieonSNP*map_l100_m1_e0hetalt
97.5000
95.1220
100.0000
70.4545
3923900
bgallagher-sentieonSNP*map_l100_m1_e0homalt
99.7886
99.6630
99.9146
57.7258
2691291269122318
78.2609
bgallagher-sentieonSNP*map_l100_m2_e0*
99.4275
99.5674
99.2880
67.0766
736443207363352881
15.3409
bgallagher-sentieonSNP*map_l100_m2_e0het
99.2145
99.5129
98.9179
70.0977
461732264616250563
12.4752
bgallagher-sentieonSNP*map_l100_m2_e0hetalt
97.5610
95.2381
100.0000
72.7891
4024000
bgallagher-sentieonSNP*map_l100_m2_e0homalt
99.7908
99.6657
99.9162
60.2352
2743192274312318
78.2609
bgallagher-sentieonSNP*map_l100_m2_e1*
99.4314
99.5705
99.2927
67.0857
744163217440553081
15.2830
bgallagher-sentieonSNP*map_l100_m2_e1het
99.2207
99.5181
98.9251
70.1134
466722264666150763
12.4260
bgallagher-sentieonSNP*map_l100_m2_e1hetalt
97.6190
95.3488
100.0000
72.2973
4124100
bgallagher-sentieonSNP*map_l100_m2_e1homalt
99.7911
99.6654
99.9170
60.2187
2770393277032318
78.2609
bgallagher-sentieonSNP*map_l125_m0_e0*
98.8636
99.1953
98.5342
75.8607
192291561922628650
17.4825
bgallagher-sentieonSNP*map_l125_m0_e0het
98.5131
99.1551
97.8793
78.7667
125571071255427240
14.7059
bgallagher-sentieonSNP*map_l125_m0_e0hetalt
94.1176
88.8889
100.0000
77.1429
81800
bgallagher-sentieonSNP*map_l125_m0_e0homalt
99.5370
99.2849
99.7904
67.2503
66644866641410
71.4286
bgallagher-sentieonSNP*map_l125_m1_e0*
99.2644
99.4418
99.0876
71.3529
450742534506841570
16.8675
bgallagher-sentieonSNP*map_l125_m1_e0het
98.9928
99.3695
98.6190
74.6006
282131792820739555
13.9241
bgallagher-sentieonSNP*map_l125_m1_e0hetalt
96.5517
93.3333
100.0000
71.4286
2822800
bgallagher-sentieonSNP*map_l125_m1_e0homalt
99.7275
99.5741
99.8813
63.4132
1683372168332015
75.0000
bgallagher-sentieonSNP*map_l125_m2_e0*
99.2735
99.4499
99.0978
72.9518
464662574646042370
16.5485
bgallagher-sentieonSNP*map_l125_m2_e0het
99.0076
99.3826
98.6355
75.8378
291371812913140355
13.6476
bgallagher-sentieonSNP*map_l125_m2_e0hetalt
96.5517
93.3333
100.0000
76.0684
2822800
bgallagher-sentieonSNP*map_l125_m2_e0homalt
99.7291
99.5741
99.8845
66.0253
1730174173012015
75.0000
bgallagher-sentieonSNP*map_l125_m2_e1*
99.2798
99.4555
99.1048
72.9953
469452574693942470
16.5094
astatham-gatkSNP***
99.5934
99.2091
99.9807
19.0428
3030461241583030315584162
27.7397
astatham-gatkSNP**het
99.3521
98.7393
99.9725
20.1637
184996723620184984550895
18.7008
astatham-gatkSNP**hetalt
99.7699
99.5408
100.0000
40.6164
867486700
astatham-gatkSNP**homalt
99.9742
99.9548
99.9936
17.1971
117962753411796037667
88.1579
astatham-gatkSNP*HG002complexvar*
99.1835
98.3938
99.9860
19.2643
7422641211774211210462
59.6154
astatham-gatkSNP*HG002complexvarhet
98.7010
97.4496
99.9850
18.8713
453625118724534986828
41.1765
astatham-gatkSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
astatham-gatkSNP*HG002complexvarhomalt
99.9516
99.9158
99.9875
19.8527
2883312432883063634
94.4444
astatham-gatkSNP*HG002compoundhet*
99.2284
98.6058
99.8588
41.2826
25462360254553634
94.4444
astatham-gatkSNP*HG002compoundhethet
98.6981
97.5878
99.8340
46.2177
13836342138342322
95.6522
astatham-gatkSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800