PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84001-84050 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | map_l250_m1_e0 | het | 71.0849 | 85.8491 | 60.6538 | 92.0278 | 2548 | 420 | 2542 | 1649 | 363 | 22.0133 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m1_e0 | homalt | 84.7951 | 73.9266 | 99.4103 | 87.1481 | 1188 | 419 | 1180 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | * | 75.7617 | 82.2684 | 70.2088 | 91.5692 | 4120 | 888 | 4103 | 1741 | 394 | 22.6307 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | het | 72.1503 | 86.5704 | 61.8482 | 92.2282 | 2817 | 437 | 2811 | 1734 | 389 | 22.4337 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e0 | homalt | 85.1522 | 74.4425 | 99.4611 | 88.0122 | 1302 | 447 | 1292 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | * | 75.8245 | 82.3089 | 70.2872 | 91.6096 | 4178 | 898 | 4161 | 1759 | 398 | 22.6265 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | het | 72.2384 | 86.6323 | 61.9461 | 92.2704 | 2858 | 441 | 2852 | 1752 | 393 | 22.4315 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e1 | homalt | 85.1502 | 74.4357 | 99.4681 | 88.0298 | 1319 | 453 | 1309 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_siren | * | 88.3716 | 90.3532 | 86.4749 | 58.5181 | 90674 | 9681 | 89812 | 14047 | 3559 | 25.3364 | |
| anovak-vg | SNP | ti | map_siren | het | 85.3428 | 91.0279 | 80.3260 | 62.0963 | 56785 | 5597 | 56323 | 13795 | 3334 | 24.1682 | |
| anovak-vg | SNP | ti | map_siren | hetalt | 0.0000 | 29.8246 | 0.0000 | 0.0000 | 17 | 40 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_siren | homalt | 94.0329 | 89.3343 | 99.2531 | 48.3941 | 33872 | 4044 | 33489 | 252 | 225 | 89.2857 | |
| anovak-vg | SNP | ti | segdup | * | 97.8325 | 97.8809 | 97.7842 | 91.7442 | 19123 | 414 | 19020 | 431 | 163 | 37.8190 | |
| anovak-vg | SNP | ti | segdup | het | 97.2381 | 97.4480 | 97.0290 | 93.2429 | 11723 | 307 | 11659 | 357 | 90 | 25.2101 | |
| anovak-vg | SNP | ti | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | segdup | homalt | 98.8024 | 98.6009 | 99.0047 | 87.1313 | 7400 | 105 | 7361 | 74 | 73 | 98.6486 | |
| anovak-vg | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | het | 83.5443 | 75.0000 | 94.2857 | 45.3125 | 33 | 11 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | tech_badpromoters | homalt | 94.9679 | 92.6829 | 97.3684 | 29.6296 | 38 | 3 | 37 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | * | * | 98.3366 | 98.3717 | 98.3016 | 24.5602 | 953908 | 15790 | 951566 | 16441 | 6526 | 39.6934 | |
| anovak-vg | SNP | tv | * | het | 97.9352 | 98.2070 | 97.6649 | 27.4537 | 581095 | 10609 | 580225 | 13873 | 4566 | 32.9129 | |
| anovak-vg | SNP | tv | * | hetalt | 0.0000 | 14.4661 | 0.0000 | 0.0000 | 126 | 745 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | * | homalt | 99.0679 | 98.8237 | 99.3132 | 19.4559 | 372687 | 4436 | 371341 | 2568 | 1960 | 76.3240 | |
| anovak-vg | SNP | tv | HG002complexvar | * | 97.7258 | 97.1262 | 98.3329 | 22.6263 | 239081 | 7074 | 235589 | 3994 | 2964 | 74.2113 | |
| anovak-vg | SNP | tv | HG002complexvar | het | 97.4369 | 96.9012 | 97.9786 | 22.5474 | 146063 | 4671 | 144347 | 2978 | 2196 | 73.7408 | |
| anovak-vg | SNP | tv | HG002complexvar | hetalt | 0.0000 | 15.8065 | 0.0000 | 0.0000 | 49 | 261 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | HG002complexvar | homalt | 98.3199 | 97.7479 | 98.8987 | 22.7520 | 92969 | 2142 | 91242 | 1016 | 768 | 75.5906 | |
| anovak-vg | SNP | tv | HG002compoundhet | * | 74.6577 | 75.2101 | 74.1133 | 50.0629 | 6711 | 2212 | 7063 | 2467 | 1646 | 66.7207 | |
| anovak-vg | SNP | tv | HG002compoundhet | het | 77.7767 | 79.7346 | 75.9127 | 53.8008 | 3726 | 947 | 4346 | 1379 | 1030 | 74.6918 | |
| anovak-vg | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 14.6172 | 0.0000 | 0.0000 | 126 | 736 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | HG002compoundhet | homalt | 77.3553 | 84.3861 | 71.4060 | 43.1411 | 2859 | 529 | 2717 | 1088 | 616 | 56.6176 | |
| anovak-vg | SNP | tv | decoy | * | 0.0000 | 0.0000 | 99.9988 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | decoy | het | 0.0000 | 0.0000 | 99.9986 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | func_cds | * | 98.2741 | 97.7580 | 98.7957 | 36.4158 | 4273 | 98 | 4266 | 52 | 32 | 61.5385 | |
| anovak-vg | SNP | tv | func_cds | het | 97.9570 | 97.3654 | 98.5557 | 42.0612 | 2587 | 70 | 2593 | 38 | 21 | 55.2632 | |
| anovak-vg | SNP | tv | func_cds | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 3 | 7 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | func_cds | homalt | 98.9685 | 98.7676 | 99.1701 | 25.0222 | 1683 | 21 | 1673 | 14 | 11 | 78.5714 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.3470 | 92.5462 | 90.1786 | 71.2135 | 1403 | 113 | 1414 | 154 | 61 | 39.6104 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.1362 | 91.0282 | 87.3213 | 73.7422 | 903 | 89 | 916 | 133 | 46 | 34.5865 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||