PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83651-83700 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | map_siren | * | 98.2653 | 98.4743 | 98.0572 | 58.9696 | 143997 | 2231 | 143999 | 2853 | 550 | 19.2780 | |
| cchapple-custom | SNP | * | map_siren | het | 97.7546 | 98.5944 | 96.9290 | 63.2688 | 89712 | 1279 | 89826 | 2846 | 543 | 19.0794 | |
| cchapple-custom | SNP | * | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_siren | homalt | 99.1241 | 98.2758 | 99.9871 | 48.6990 | 54205 | 951 | 54173 | 7 | 7 | 100.0000 | |
| cchapple-custom | SNP | * | segdup | * | 99.5856 | 99.8219 | 99.3504 | 91.8828 | 28017 | 50 | 27988 | 183 | 25 | 13.6612 | |
| cchapple-custom | SNP | * | segdup | het | 99.4246 | 99.7863 | 99.0654 | 93.2744 | 17280 | 37 | 17278 | 163 | 5 | 3.0675 | |
| cchapple-custom | SNP | * | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | segdup | homalt | 99.8463 | 99.8790 | 99.8136 | 87.7694 | 10730 | 13 | 10710 | 20 | 20 | 100.0000 | |
| cchapple-custom | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | tech_badpromoters | * | 98.0932 | 98.7261 | 97.4684 | 50.9317 | 155 | 2 | 154 | 4 | 1 | 25.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 56.1111 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | tech_badpromoters | homalt | 98.7421 | 98.7500 | 98.7342 | 44.3662 | 79 | 1 | 78 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | * | * | 99.8773 | 99.8866 | 99.8679 | 19.3368 | 2083147 | 2364 | 2081936 | 2754 | 477 | 17.3203 | |
| cchapple-custom | SNP | ti | * | het | 99.8339 | 99.8795 | 99.7883 | 21.7295 | 1280346 | 1545 | 1280384 | 2716 | 443 | 16.3108 | |
| cchapple-custom | SNP | ti | * | hetalt | 0.0000 | 99.4845 | 0.0000 | 0.0000 | 579 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | * | homalt | 99.9468 | 99.8984 | 99.9953 | 15.1867 | 802222 | 816 | 801552 | 38 | 34 | 89.4737 | |
| cchapple-custom | SNP | ti | HG002complexvar | * | 99.8096 | 99.6932 | 99.9263 | 17.3694 | 506876 | 1560 | 505502 | 373 | 274 | 73.4584 | |
| cchapple-custom | SNP | ti | HG002complexvar | het | 99.7945 | 99.6988 | 99.8903 | 17.3501 | 313818 | 948 | 313318 | 344 | 249 | 72.3837 | |
| cchapple-custom | SNP | ti | HG002complexvar | hetalt | 0.0000 | 98.5507 | 0.0000 | 0.0000 | 204 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | HG002complexvar | homalt | 99.8348 | 99.6852 | 99.9849 | 17.4009 | 192854 | 609 | 192184 | 29 | 25 | 86.2069 | |
| cchapple-custom | SNP | ti | HG002compoundhet | * | 99.2669 | 98.9816 | 99.5539 | 35.4095 | 17300 | 178 | 17406 | 78 | 64 | 82.0513 | |
| cchapple-custom | SNP | ti | HG002compoundhet | het | 99.0513 | 98.8217 | 99.2820 | 39.9079 | 9393 | 112 | 10233 | 74 | 60 | 81.0811 | |
| cchapple-custom | SNP | ti | HG002compoundhet | hetalt | 0.0000 | 99.4819 | 0.0000 | 0.0000 | 576 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | HG002compoundhet | homalt | 99.5445 | 99.1480 | 99.9443 | 27.6293 | 7331 | 63 | 7173 | 4 | 4 | 100.0000 | |
| cchapple-custom | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | func_cds | * | 99.8586 | 99.9202 | 99.7971 | 24.6780 | 13776 | 11 | 13774 | 28 | 1 | 3.5714 | |
| cchapple-custom | SNP | ti | func_cds | het | 99.7946 | 99.9177 | 99.6718 | 27.6397 | 8497 | 7 | 8504 | 28 | 1 | 3.5714 | |
| cchapple-custom | SNP | ti | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | func_cds | homalt | 99.9621 | 99.9242 | 100.0000 | 19.3326 | 5271 | 4 | 5270 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.3846 | 99.2919 | 99.4776 | 66.9410 | 3225 | 23 | 3237 | 17 | 3 | 17.6471 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.2140 | 99.2589 | 99.1691 | 72.0797 | 2009 | 15 | 2029 | 17 | 3 | 17.6471 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6721 | 99.3464 | 100.0000 | 51.9682 | 1216 | 8 | 1208 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6177 | 99.6495 | 99.5860 | 52.1198 | 27861 | 98 | 27903 | 116 | 33 | 28.4483 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4978 | 99.5967 | 99.3992 | 57.0007 | 17779 | 72 | 17867 | 108 | 27 | 25.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 5 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8364 | 99.7525 | 99.9204 | 39.9139 | 10077 | 25 | 10036 | 8 | 6 | 75.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1128 | 99.3482 | 98.8786 | 72.9414 | 30940 | 203 | 30949 | 351 | 41 | 11.6809 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |