PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83601-83650 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 43 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m2_e1 | homalt | 98.7359 | 97.5104 | 99.9926 | 58.6714 | 27104 | 692 | 27093 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | * | 96.1705 | 96.0794 | 96.2618 | 77.2988 | 18625 | 760 | 18618 | 723 | 176 | 24.3430 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | het | 95.3778 | 96.3598 | 94.4157 | 80.7050 | 12203 | 461 | 12207 | 722 | 175 | 24.2382 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 9 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m0_e0 | homalt | 97.7145 | 95.5453 | 99.9844 | 64.7518 | 6413 | 299 | 6411 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | * | 96.8884 | 97.0680 | 96.7095 | 73.1758 | 43998 | 1329 | 43998 | 1497 | 343 | 22.9125 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | het | 96.0557 | 97.2739 | 94.8677 | 77.0814 | 27618 | 774 | 27653 | 1496 | 342 | 22.8610 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m1_e0 | homalt | 98.3281 | 96.7169 | 99.9939 | 61.4654 | 16350 | 555 | 16345 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | * | 96.9367 | 97.1235 | 96.7507 | 75.0489 | 45379 | 1344 | 45379 | 1524 | 347 | 22.7690 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | het | 96.1245 | 97.3395 | 94.9395 | 78.6207 | 28538 | 780 | 28573 | 1523 | 346 | 22.7183 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e0 | homalt | 98.3473 | 96.7540 | 99.9941 | 64.3980 | 16811 | 564 | 16806 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | * | 96.9542 | 97.1463 | 96.7628 | 75.1056 | 45855 | 1347 | 45852 | 1534 | 347 | 22.6206 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | het | 96.1447 | 97.3583 | 94.9610 | 78.6712 | 28857 | 783 | 28890 | 1533 | 346 | 22.5701 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e1 | homalt | 98.3624 | 96.7830 | 99.9941 | 64.4456 | 16968 | 564 | 16962 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | * | 95.8209 | 95.5951 | 96.0478 | 81.9455 | 11502 | 530 | 11495 | 473 | 120 | 25.3700 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | het | 94.9871 | 95.8312 | 94.1577 | 84.6817 | 7609 | 331 | 7607 | 472 | 119 | 25.2119 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l150_m0_e0 | homalt | 97.4937 | 95.1333 | 99.9743 | 71.2925 | 3890 | 199 | 3888 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | * | 96.5908 | 96.7363 | 96.4458 | 77.1687 | 29610 | 999 | 29605 | 1091 | 240 | 21.9982 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | het | 95.6722 | 96.8731 | 94.5008 | 80.5876 | 18712 | 604 | 18731 | 1090 | 239 | 21.9266 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l150_m1_e0 | homalt | 98.2123 | 96.4961 | 99.9908 | 66.3750 | 10878 | 395 | 10874 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m2_e0 | * | 96.6523 | 96.8134 | 96.4917 | 78.8019 | 30837 | 1015 | 30832 | 1121 | 246 | 21.9447 | |
| cchapple-custom | SNP | * | map_l150_m2_e0 | het | 95.7599 | 96.9701 | 94.5794 | 81.9061 | 19523 | 610 | 19542 | 1120 | 245 | 21.8750 | |
| cchapple-custom | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l150_m2_e0 | homalt | 98.2343 | 96.5382 | 99.9911 | 69.1013 | 11294 | 405 | 11290 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | * | 96.6680 | 96.8395 | 96.4971 | 78.8652 | 31192 | 1018 | 31184 | 1132 | 247 | 21.8198 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | het | 95.7763 | 96.9945 | 94.5883 | 81.9692 | 19751 | 612 | 19768 | 1131 | 246 | 21.7507 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l150_m2_e1 | homalt | 98.2494 | 96.5672 | 99.9912 | 69.1407 | 11421 | 406 | 11416 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | * | 95.4584 | 94.5667 | 96.3671 | 93.6675 | 2019 | 116 | 2016 | 76 | 21 | 27.6316 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | het | 94.5598 | 94.1567 | 94.9664 | 94.4554 | 1418 | 88 | 1415 | 75 | 20 | 26.6667 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | map_l250_m0_e0 | homalt | 97.6442 | 95.5485 | 99.8339 | 90.2320 | 601 | 28 | 601 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | * | 96.0890 | 95.7906 | 96.3892 | 89.6069 | 6918 | 304 | 6914 | 259 | 62 | 23.9382 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | het | 95.0712 | 95.5205 | 94.6261 | 91.1826 | 4542 | 213 | 4543 | 258 | 61 | 23.6434 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m1_e0 | homalt | 98.0976 | 96.3053 | 99.9578 | 83.7177 | 2372 | 91 | 2371 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | * | 96.1788 | 95.9417 | 96.4172 | 90.1898 | 7565 | 320 | 7562 | 281 | 65 | 23.1317 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | het | 95.2059 | 95.7451 | 94.6728 | 91.6166 | 4973 | 221 | 4976 | 280 | 64 | 22.8571 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m2_e0 | homalt | 98.1039 | 96.3142 | 99.9613 | 85.0046 | 2587 | 99 | 2586 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | * | 96.1831 | 95.9309 | 96.4367 | 90.2654 | 7662 | 325 | 7659 | 283 | 66 | 23.3216 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | het | 95.2117 | 95.7257 | 94.7032 | 91.6862 | 5039 | 225 | 5042 | 282 | 65 | 23.0496 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m2_e1 | homalt | 98.1075 | 96.3208 | 99.9618 | 85.0801 | 2618 | 100 | 2617 | 1 | 1 | 100.0000 | |