PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 994 995 996 997 998 999 1000 1001 1002 ... 1720 1721 » 49851-49900 / 86044 show all
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	80.0000	2	0	2	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.9697	2	0	2	0	0
ckim-vqsr	SNP	ti	map_l100_m0_e0	hetalt	25.0000	14.2857	100.0000	97.2973	2	12	2	0	0
dgrover-gatk	INDEL	D6_15	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	96.0000	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	96.8750	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	96.9231	2	0	2	0	0
dgrover-gatk	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	88.2353	2	0	2	0	0
dgrover-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	66.6667	50.0000	100.0000	93.5484	2	2	2	0	0
dgrover-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	40.0000	2	0	3	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l100_m0_e0	homalt	80.0000	100.0000	66.6667	98.2558	2	0	2	1	0	0.0000
dgrover-gatk	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	92.3077	2	1	2	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	93.7500	2	1	2	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	93.9394	2	1	2	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l125_m0_e0	homalt	80.0000	100.0000	66.6667	98.0263	2	0	2	1	0	0.0000
dgrover-gatk	INDEL	I16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	88.8889	2	1	2	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l125_m2_e0	hetalt	80.0000	66.6667	100.0000	90.4762	2	1	2	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l125_m2_e1	hetalt	80.0000	66.6667	100.0000	90.4762	2	1	2	0	0
dgrover-gatk	INDEL	I16_PLUS	map_l150_m0_e0	het	80.0000	100.0000	66.6667	97.6744	2	0	2	1	0	0.0000
dgrover-gatk	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
dgrover-gatk	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
dgrover-gatk	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	100.0000	66.6667	91.6667	2	0	2	1	0	0.0000
dgrover-gatk	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.0583	2	0	2	0	0
dgrover-gatk	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.4496	2	0	2	0	0
dgrover-gatk	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.4733	2	0	2	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8675	2	0	2	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.3958	2	0	2	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m1_e0	homalt	80.0000	66.6667	100.0000	97.8261	2	1	2	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m2_e0	homalt	80.0000	66.6667	100.0000	97.9592	2	1	2	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m2_e1	homalt	80.0000	66.6667	100.0000	98.0769	2	1	2	0	0
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	91.3043	2	0	2	0	0
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.0000	2	0	2	0	0
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	97.3333	2	0	2	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	92.3077	2	0	2	0	0
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	80.0000	2	0	2	0	0
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.7742	2	0	2	0	0
dgrover-gatk	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	98.6207	2	0	2	0	0
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	91.3043	2	0	2	0	0
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.0000	2	0	2	0	0
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	80.0000	66.6667	100.0000	99.0385	2	1	1	0	0
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	57.1429	40.0000	100.0000	99.8373	2	3	2	0	0
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	80.0000	66.6667	100.0000	98.9583	2	1	1	0	0
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	66.6667	50.0000	100.0000	99.8337	2	2	2	0	0
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	66.6667	66.6667	66.6667	99.5787	2	1	2	1	1	100.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	80.0000	100.0000	66.6667	97.3214	2	0	2	1	1	100.0000
ckim-isaac	INDEL	I6_15	map_l100_m0_e0	homalt	28.5714	16.6667	100.0000	91.6667	2	10	2	0	0
ckim-isaac	INDEL	I6_15	map_l125_m0_e0	homalt	50.0000	33.3333	100.0000	86.6667	2	4	2	0	0
ckim-isaac	INDEL	I6_15	map_l150_m0_e0	het	66.6667	50.0000	100.0000	98.1982	2	2	2	0	0
ckim-isaac	INDEL	I6_15	map_l150_m1_e0	hetalt	80.0000	66.6667	100.0000	90.6250	2	1	3	0	0
ckim-isaac	INDEL	I6_15	map_l150_m2_e0	hetalt	80.0000	66.6667	100.0000	92.6829	2	1	3	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge