PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49551-49600 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8304 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 28.2828 | 18.1818 | 63.6364 | 88.8889 | 2 | 9 | 7 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 28.0702 | 16.6667 | 88.8889 | 82.0000 | 2 | 10 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.3333 | 2 | 24 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.7500 | 2 | 24 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 12.5000 | 6.6667 | 100.0000 | 93.7500 | 2 | 28 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.1176 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8141 | 2 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 86.9565 | 100.0000 | 76.9231 | 97.6059 | 2 | 0 | 10 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 86.9565 | 100.0000 | 76.9231 | 97.5425 | 2 | 0 | 10 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.7179 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9071 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9362 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 47.6190 | 50.0000 | 45.4545 | 94.3878 | 2 | 2 | 5 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 96.0784 | 2 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 2 | 4 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 91.6667 | 2 | 3 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2603 | 2 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | het | 2.3810 | 4.2553 | 1.6529 | 50.2058 | 2 | 45 | 2 | 119 | 119 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | homalt | 2.4742 | 66.6667 | 1.2605 | 25.1572 | 2 | 1 | 3 | 235 | 234 | 99.5745 | |
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 60.0000 | 50.0000 | 75.0000 | 60.0000 | 2 | 2 | 12 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 76.4706 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | hetalt | 22.2222 | 12.5000 | 100.0000 | 75.0000 | 2 | 14 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 2 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.4545 | 2 | 1 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0874 | 2 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1240 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2121 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | func_cds | hetalt | 57.1429 | 50.0000 | 66.6667 | 62.5000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 68.8889 | 2 | 2 | 14 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 94.8052 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.3662 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | tech_badpromoters | het | 80.0000 | 100.0000 | 66.6667 | 78.5714 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.3165 | 0.0000 | 0.0000 | 2 | 630 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.6390 | 0.0000 | 0.0000 | 2 | 311 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.1129 | 0.0000 | 0.0000 | 2 | 1769 | 0 | 0 | 0 | ||