PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 987 988 989 990 991 992 993 994 995 ... 1720 1721 » 49501-49550 / 86044 show all
jli-custom	INDEL	D6_15	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	96.8750	2	0	2	0	0
jli-custom	INDEL	D6_15	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	96.9231	2	0	2	0	0
jli-custom	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	83.3333	2	0	2	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	66.6667	50.0000	100.0000	91.6667	2	2	2	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het		66.6667		100.0000	2	1	0	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	40.0000	2	0	3	0	0
jli-custom	INDEL	I16_PLUS	map_l100_m0_e0	homalt	100.0000	100.0000	100.0000	98.6667	2	0	2	0	0
jli-custom	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	90.9091	2	1	2	0	0
jli-custom	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	91.6667	2	1	2	0	0
jli-custom	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	92.0000	2	1	2	0	0
jli-custom	INDEL	I16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	98.5075	2	0	2	0	0
jli-custom	INDEL	I16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	87.5000	2	1	2	0	0
jli-custom	INDEL	I16_PLUS	map_l125_m2_e0	hetalt	80.0000	66.6667	100.0000	88.2353	2	1	2	0	0
jli-custom	INDEL	I16_PLUS	map_l125_m2_e1	hetalt	80.0000	66.6667	100.0000	88.2353	2	1	2	0	0
jli-custom	INDEL	I16_PLUS	map_l150_m0_e0	het	80.0000	100.0000	66.6667	93.7500	2	0	2	1	0	0.0000
jli-custom	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
jli-custom	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
jli-custom	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	100.0000	66.6667	89.6552	2	0	2	1	0	0.0000
jli-custom	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	97.9592	2	0	2	0	0
jli-custom	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.3471	2	0	2	0	0
jli-custom	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.3740	2	0	2	0	0
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8500	2	0	2	0	0
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.4203	2	0	2	0	0
jli-custom	INDEL	I6_15	map_l150_m0_e0	het	57.1429	50.0000	66.6667	97.1154	2	2	2	1	1	100.0000
jli-custom	INDEL	I6_15	map_l250_m1_e0	het	57.1429	50.0000	66.6667	97.6378	2	2	2	1	1	100.0000
jli-custom	INDEL	I6_15	map_l250_m1_e0	homalt	80.0000	66.6667	100.0000	97.0149	2	1	2	0	0
jmaeng-gatk	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	99.3311	2	0	2	0	0
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.9091	2	0	2	0	0
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jmaeng-gatk	SNP	tv	map_l125_m0_e0	hetalt	36.3636	22.2222	100.0000	98.3051	2	7	2	0	0
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	66.6667	66.6667	66.6667	97.8417	2	1	2	1	1	100.0000
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	80.0000	100.0000	66.6667	97.3684	2	0	2	1	1	100.0000
jpowers-varprowl	INDEL	*	map_l100_m2_e1	hetalt	0.0000	1.5152	0.0000	0.0000	2	130	0	0	0
jpowers-varprowl	INDEL	*	map_siren	hetalt	0.0000	0.8097	0.0000	0.0000	2	245	0	0	0
jpowers-varprowl	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
jpowers-varprowl	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	HG002complexvar	hetalt	0.0000	0.8097	0.0000	0.0000	2	245	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	decoy	homalt	100.0000	100.0000	100.0000	97.1014	2	0	2	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	0.2051	0.0000	0.0000	2	973	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.2869	0.0000	0.0000	2	695	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	0.2119	0.0000	0.0000	2	942	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	0.2551	0.0000	0.0000	2	782	0	0	0
jpowers-varprowl	INDEL	D16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	99.5842	2	0	2	0	0
jpowers-varprowl	INDEL	D16_PLUS	tech_badpromoters	*	66.6667	50.0000	100.0000	50.0000	2	2	2	0	0
jpowers-varprowl	INDEL	D16_PLUS	tech_badpromoters	het	66.6667	50.0000	100.0000	0.0000	2	2	2	0	0
jpowers-varprowl	INDEL	D1_5	decoy	het	100.0000	100.0000	100.0000	99.9748	2	0	2	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	0.4866	0.0000	0.0000	2	409	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	0.0000	0.4329	0.0000	0.0000	2	460	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	66.6667	50.0000	100.0000	99.0521	2	2	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge