PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49201-49250 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 29.6296 | 18.1818 | 80.0000 | 78.5714 | 2 | 9 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 38.0952 | 25.0000 | 80.0000 | 78.2609 | 2 | 6 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 13.7405 | 7.6923 | 64.2857 | 76.0684 | 2 | 24 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 13.7681 | 7.6923 | 65.5172 | 77.6923 | 2 | 24 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 19.0000 | 11.1111 | 65.5172 | 77.3438 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 13.7681 | 7.6923 | 65.5172 | 78.1955 | 2 | 24 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e1 | het | 19.0000 | 11.1111 | 65.5172 | 77.8626 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | * | 22.9885 | 13.3333 | 83.3333 | 78.5714 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 35.0877 | 22.2222 | 83.3333 | 78.0488 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 35.0877 | 22.2222 | 83.3333 | 81.0526 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 22.9885 | 13.3333 | 83.3333 | 81.6327 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 35.0877 | 22.2222 | 83.3333 | 81.2500 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.1075 | 18.1818 | 87.5000 | 86.8852 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 48.2759 | 33.3333 | 87.5000 | 86.8852 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.1075 | 18.1818 | 87.5000 | 88.4058 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 48.2759 | 33.3333 | 87.5000 | 88.4058 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.1075 | 18.1818 | 87.5000 | 88.7324 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | het | 48.2759 | 33.3333 | 87.5000 | 88.7324 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | het | 7.6607 | 4.0816 | 62.2222 | 78.3654 | 2 | 47 | 28 | 17 | 11 | 64.7059 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | * | 7.7994 | 4.2553 | 46.6667 | 93.6170 | 2 | 45 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | het | 14.1414 | 8.3333 | 46.6667 | 93.3628 | 2 | 22 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 73.6842 | 100.0000 | 58.3333 | 83.5616 | 2 | 0 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 86.9565 | 2 | 5 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 88.0000 | 2 | 5 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.9796 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.3256 | 0.0000 | 0.0000 | 2 | 84 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.5865 | 0.0000 | 0.0000 | 2 | 339 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.7168 | 0.0000 | 0.0000 | 2 | 277 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 85.7143 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.1429 | 0.0000 | 0.0000 | 2 | 173 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 44.4444 | 50.0000 | 40.0000 | 86.4865 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 57.1429 | 100.0000 | 40.0000 | 84.8485 | 2 | 0 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.7857 | 0.0000 | 0.0000 | 2 | 110 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 2 | 58 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.3774 | 0.0000 | 0.0000 | 2 | 528 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.2787 | 0.0000 | 0.0000 | 2 | 59 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.3529 | 0.0000 | 0.0000 | 2 | 83 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3978 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.3958 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||