PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49101-49150 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 97.4684 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7143 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7401 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | het | 46.1538 | 30.0000 | 100.0000 | 63.6364 | 3 | 7 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.5517 | 3 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 23.0769 | 100.0000 | 71.4286 | 3 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.6810 | 100.0000 | 1.8750 | 78.4657 | 3 | 0 | 3 | 157 | 3 | 1.9108 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.6810 | 100.0000 | 1.8750 | 78.4657 | 3 | 0 | 3 | 157 | 3 | 1.9108 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | * | 46.1538 | 30.0000 | 100.0000 | 99.9940 | 3 | 7 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 92.0354 | 3 | 6 | 0 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9884 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 31.5789 | 21.4286 | 60.0000 | 98.9562 | 3 | 11 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.2793 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.3344 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 50.0000 | 3 | 9 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 60.0000 | 100.0000 | 3 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | het | 35.2941 | 21.4286 | 100.0000 | 99.5902 | 3 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | homalt | 50.0000 | 100.0000 | 3 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | het | 35.2941 | 21.4286 | 100.0000 | 99.6016 | 3 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | homalt | 50.0000 | 100.0000 | 3 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.7037 | 11.1111 | 2.2222 | 94.8276 | 3 | 24 | 1 | 44 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2012 | 12.0000 | 17.3913 | 88.3838 | 3 | 22 | 4 | 19 | 3 | 15.7895 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 21.2389 | 13.0435 | 57.1429 | 46.1538 | 3 | 20 | 4 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | het | 35.2941 | 37.5000 | 33.3333 | 89.1566 | 3 | 5 | 3 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | func_cds | homalt | 33.3333 | 20.0000 | 100.0000 | 50.0000 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 9.2308 | 5.0847 | 50.0000 | 85.3659 | 3 | 56 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | * | 13.9535 | 9.0909 | 30.0000 | 94.4751 | 3 | 30 | 3 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 37.5000 | 25.0000 | 75.0000 | 89.7436 | 3 | 9 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.1806 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.5839 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | * | 9.3750 | 5.6604 | 27.2727 | 96.6967 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | * | 33.3333 | 23.0769 | 60.0000 | 66.6667 | 3 | 10 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1860 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9196 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 35.2941 | 23.0769 | 75.0000 | 69.2308 | 3 | 10 | 3 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4094 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||