PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48951-49000 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 3 | 1 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.5309 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.8904 | 3 | 1 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.8610 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.2579 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.2381 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.0000 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.0476 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.0495 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 95.0980 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.3171 | 100.0000 | 3.7975 | 66.5254 | 3 | 0 | 3 | 76 | 75 | 98.6842 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2025 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6292 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6292 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.3333 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.1963 | 3 | 2 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.3451 | 3 | 2 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5075 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7448 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.0000 | 100.0000 | 60.0000 | 96.4789 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 97.9058 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | homalt | 17.1429 | 100.0000 | 9.3750 | 81.1765 | 3 | 0 | 3 | 29 | 28 | 96.5517 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 76.4706 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 96.7480 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |