PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4851-4900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | het | 97.2146 | 99.3218 | 95.1950 | 76.6930 | 15670 | 107 | 15671 | 791 | 98 | 12.3894 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | het | 98.9548 | 98.3185 | 99.5995 | 57.2767 | 15670 | 268 | 15666 | 63 | 5 | 7.9365 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 93.7863 | 0.0000 | 0.0000 | 15667 | 1038 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 93.7863 | 0.0000 | 0.0000 | 15667 | 1038 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9501 | 99.4036 | 98.5008 | 62.9678 | 15666 | 94 | 15506 | 236 | 204 | 86.4407 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | het | 99.4695 | 99.2394 | 99.7006 | 66.3242 | 15657 | 120 | 15653 | 47 | 12 | 25.5319 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4067 | 97.3876 | 99.4474 | 67.5648 | 15657 | 420 | 15658 | 87 | 73 | 83.9080 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4067 | 97.3876 | 99.4474 | 67.5648 | 15657 | 420 | 15658 | 87 | 73 | 83.9080 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | homalt | 94.3221 | 89.3053 | 99.9361 | 69.8871 | 15657 | 1875 | 15646 | 10 | 9 | 90.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9340 | 99.3274 | 98.5437 | 62.8374 | 15654 | 106 | 15496 | 229 | 203 | 88.6463 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | het | 88.9909 | 82.0139 | 97.2654 | 86.9813 | 15654 | 3433 | 15650 | 440 | 39 | 8.8636 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9118 | 99.3147 | 98.5122 | 62.5969 | 15652 | 108 | 15494 | 234 | 208 | 88.8889 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8361 | 99.3147 | 98.3621 | 62.3698 | 15652 | 108 | 15494 | 258 | 231 | 89.5349 | |
| eyeh-varpipe | INDEL | I6_15 | * | * | 71.2994 | 63.0343 | 82.0590 | 39.8519 | 15647 | 9176 | 15734 | 3440 | 3408 | 99.0698 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | het | 98.0513 | 99.1697 | 96.9579 | 75.2085 | 15646 | 131 | 15649 | 491 | 32 | 6.5173 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | het | 99.1350 | 99.1697 | 99.1004 | 66.6194 | 15646 | 131 | 15642 | 142 | 59 | 41.5493 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7059 | 93.6606 | 99.9559 | 40.2439 | 15646 | 1059 | 15869 | 7 | 6 | 85.7143 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7059 | 93.6606 | 99.9559 | 40.2439 | 15646 | 1059 | 15869 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2504 | 99.2513 | 99.2495 | 62.6333 | 15642 | 118 | 15472 | 117 | 78 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | het | 94.4719 | 98.1303 | 91.0764 | 80.3818 | 15640 | 298 | 15585 | 1527 | 90 | 5.8939 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | het | 99.2133 | 99.1190 | 99.3078 | 65.8320 | 15638 | 139 | 15637 | 109 | 24 | 22.0183 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8985 | 99.2195 | 98.5796 | 63.0301 | 15637 | 123 | 15477 | 223 | 202 | 90.5830 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0126 | 97.4325 | 98.5996 | 53.5616 | 15635 | 412 | 16687 | 237 | 217 | 91.5612 | |
| cchapple-custom | SNP | tv | map_l100_m2_e1 | het | 96.3138 | 98.0926 | 94.5983 | 75.6213 | 15634 | 304 | 15674 | 895 | 134 | 14.9721 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4417 | 95.1488 | 89.8844 | 58.8124 | 15632 | 797 | 15630 | 1759 | 720 | 40.9323 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | het | 98.8079 | 98.0299 | 99.5983 | 53.4836 | 15624 | 314 | 15620 | 63 | 2 | 3.1746 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.7904 | 78.6275 | 87.4187 | 53.2630 | 15617 | 4245 | 16259 | 2340 | 997 | 42.6068 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4536 | 93.4690 | 99.6351 | 39.9267 | 15614 | 1091 | 15838 | 58 | 57 | 98.2759 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4536 | 93.4690 | 99.6351 | 39.9267 | 15614 | 1091 | 15838 | 58 | 57 | 98.2759 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6849 | 97.2767 | 98.0965 | 60.4473 | 15610 | 437 | 15615 | 303 | 282 | 93.0693 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.7068 | 91.9529 | 99.7804 | 63.8066 | 15609 | 1366 | 15447 | 34 | 16 | 47.0588 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.7068 | 91.9529 | 99.7804 | 63.8066 | 15609 | 1366 | 15447 | 34 | 16 | 47.0588 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2099 | 97.0828 | 99.3634 | 67.3172 | 15608 | 469 | 15609 | 100 | 84 | 84.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2099 | 97.0828 | 99.3634 | 67.3172 | 15608 | 469 | 15609 | 100 | 84 | 84.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | het | 99.3093 | 98.8845 | 99.7379 | 65.3478 | 15601 | 176 | 15601 | 41 | 13 | 31.7073 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6853 | 98.9657 | 98.4065 | 63.1662 | 15597 | 163 | 15439 | 250 | 223 | 89.2000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1965 | 97.0144 | 99.4078 | 64.7466 | 15597 | 480 | 15611 | 93 | 72 | 77.4194 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1965 | 97.0144 | 99.4078 | 64.7466 | 15597 | 480 | 15611 | 93 | 72 | 77.4194 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.6332 | 88.2406 | 95.2970 | 51.5896 | 15593 | 2078 | 16717 | 825 | 785 | 95.1515 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.6332 | 88.2406 | 95.2970 | 51.5896 | 15593 | 2078 | 16717 | 825 | 785 | 95.1515 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4805 | 97.1646 | 97.7985 | 57.9258 | 15592 | 455 | 15593 | 351 | 340 | 96.8661 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2447 | 97.1397 | 99.3753 | 55.6990 | 15588 | 459 | 15589 | 98 | 89 | 90.8163 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3079 | 97.1210 | 99.5241 | 52.9586 | 15585 | 462 | 15476 | 74 | 51 | 68.9189 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | * | 96.5512 | 97.3027 | 95.8113 | 74.0329 | 15584 | 432 | 15577 | 681 | 116 | 17.0338 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9984 | 98.8832 | 99.1137 | 59.5275 | 15584 | 176 | 15433 | 138 | 107 | 77.5362 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002complexvar | het | 91.7425 | 85.6452 | 98.7744 | 60.7292 | 15578 | 2611 | 15555 | 193 | 126 | 65.2850 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | * | 96.8139 | 97.2340 | 96.3974 | 74.1586 | 15573 | 443 | 15573 | 582 | 212 | 36.4261 | |