PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48851-48900 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9295 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.6170 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.0930 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.6526 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.6852 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7444 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9307 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5909 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.3516 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5926 | 3 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 98.8827 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 98.8950 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1707 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.6957 | 100.0000 | 4.5455 | 78.0731 | 3 | 0 | 3 | 63 | 59 | 93.6508 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.7055 | 3 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 75.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 98.1221 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6562 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | segdup | hetalt | 75.0000 | 75.0000 | 75.0000 | 97.4522 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5909 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.6667 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 97.3545 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||