PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48351-48400 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.6577 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7362 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.7461 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 100.0000 | 42.8571 | 97.1774 | 3 | 0 | 3 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 97.9021 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.2963 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.4286 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.3812 | 100.0000 | 2.7650 | 59.0566 | 3 | 0 | 6 | 211 | 173 | 81.9905 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 42.4779 | 75.0000 | 29.6296 | 79.2308 | 3 | 1 | 8 | 19 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 85.1064 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.6667 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.7925 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.2836 | 3 | 0 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 73.1707 | 75.0000 | 71.4286 | 95.5975 | 3 | 1 | 5 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.4979 | 3 | 6 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 95.7143 | 3 | 4 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 96.3415 | 3 | 4 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.0000 | 100.0000 | 60.0000 | 96.2121 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 95.0495 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.3333 | 100.0000 | 4.3478 | 68.0556 | 3 | 0 | 3 | 66 | 66 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.1039 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.5455 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 95.7143 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | het | 31.5789 | 20.0000 | 75.0000 | 95.5556 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 40.0000 | 25.0000 | 100.0000 | 60.0000 | 3 | 9 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | het | 47.0588 | 33.3333 | 80.0000 | 89.3617 | 3 | 6 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.0556 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.7500 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | * | 50.0000 | 37.5000 | 75.0000 | 95.8333 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 80.0000 | 3 | 13 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 80.0000 | 3 | 13 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9319 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | * | * | 46.1538 | 30.0000 | 100.0000 | 98.8636 | 3 | 7 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.9209 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 75.0000 | 60.0000 | 80.0000 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 94.9367 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 95.5056 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 95.6044 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 3 | 0 | 3 | 0 | 0 | ||