PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48151-48200 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4706 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.2973 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.4194 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5410 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3214 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | homalt | 12.0000 | 100.0000 | 6.3830 | 77.2947 | 3 | 0 | 3 | 44 | 43 | 97.7273 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 96.1538 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.5000 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.1429 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.3856 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.3856 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.4286 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.5455 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.0588 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2028 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||