PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47751-47800 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 67.7966 | 57.1429 | 83.3333 | 98.1928 | 4 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.9424 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 98.0315 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.2222 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.5254 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7186 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6989 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.5845 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.6636 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | * | func_cds | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| egarrison-hhga | INDEL | C1_5 | * | * | 40.0000 | 100.0000 | 4 | 6 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.2857 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.4684 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.6048 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 84.6154 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 90.1961 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 87.1795 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3451 | 4 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.1538 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m1_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.6608 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5069 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.3344 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.4166 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.3998 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.7407 | 4 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.9799 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3958 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4359 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |