PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47551-47600 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | * | 72.1017 | 100.0000 | 56.3743 | 72.3480 | 4 | 0 | 482 | 373 | 150 | 40.2145 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | het | 70.5584 | 100.0000 | 54.5098 | 71.9266 | 4 | 0 | 417 | 348 | 129 | 37.0690 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.7326 | 0.3676 | 100.0000 | 86.4865 | 4 | 1084 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 4.7019 | 2.5478 | 30.4348 | 66.6667 | 4 | 153 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 21.0526 | 14.2857 | 40.0000 | 91.8033 | 4 | 24 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 27.5862 | 21.0526 | 40.0000 | 91.3793 | 4 | 15 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | * | 8.2474 | 4.5977 | 40.0000 | 95.3052 | 4 | 83 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | * | 7.4074 | 4.1237 | 36.3636 | 95.4545 | 4 | 93 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | het | 12.9032 | 7.8431 | 36.3636 | 95.2790 | 4 | 47 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | * | 22.8571 | 14.8148 | 50.0000 | 93.6508 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.3884 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | * | 22.8571 | 14.8148 | 50.0000 | 94.2446 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.9394 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 22.2222 | 14.2857 | 50.0000 | 94.2857 | 4 | 24 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 28.5714 | 20.0000 | 50.0000 | 93.9850 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | * | * | 0.1179 | 0.0590 | 100.0000 | 0.0000 | 4 | 6780 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | HG002complexvar | * | 0.4857 | 0.2435 | 100.0000 | 0.0000 | 4 | 1639 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9653 | 4 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.6879 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.8947 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 66.6667 | 66.6667 | 66.6667 | 99.8717 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 4 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 80.0000 | 100.0000 | 4 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 94.9153 | 4 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 21.4286 | 16.6667 | 30.0000 | 64.2857 | 4 | 20 | 3 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.8439 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 1.2658 | 0.0000 | 0.0000 | 4 | 312 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.2780 | 0.0000 | 0.0000 | 4 | 309 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 50.0000 | 44.4444 | 57.1429 | 96.9957 | 4 | 5 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 92.3077 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 97.7049 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 97.7987 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5084 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 36.3636 | 80.0000 | 99.8480 | 4 | 7 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3333 | 40.0000 | 80.0000 | 99.8413 | 4 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 61.5385 | 50.0000 | 80.0000 | 99.1776 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.0149 | 4 | 3 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 51.0638 | 44.4444 | 60.0000 | 98.6226 | 4 | 5 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 52.1739 | 40.0000 | 75.0000 | 99.2395 | 4 | 6 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | func_cds | het | 25.0000 | 16.6667 | 50.0000 | 50.0000 | 4 | 20 | 4 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 15.6250 | 9.0909 | 55.5556 | 80.8511 | 4 | 40 | 5 | 4 | 2 | 50.0000 | |