PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47251-47300 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 88.8889 | 80.0000 | 100.0000 | 99.6105 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8142 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1735 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2143 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | HG002complexvar | * | 80.0000 | 100.0000 | 66.6667 | 78.5714 | 4 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6813 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 4 | 0 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | decoy | * | 80.0000 | 66.6667 | 100.0000 | 97.7401 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.0000 | 0.0000 | 0.0000 | 4 | 21 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 94.5312 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 95.5056 | 4 | 5 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5517 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5753 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.7480 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 94.2029 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 4 | 48 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 10.2564 | 0.0000 | 0.0000 | 4 | 35 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 4.1237 | 0.0000 | 0.0000 | 4 | 93 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 7.6190 | 4.5977 | 22.2222 | 91.6667 | 4 | 83 | 4 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 34.7826 | 23.5294 | 66.6667 | 93.8776 | 4 | 13 | 4 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2857 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.5362 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6572 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 98.2301 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9751 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3607 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.5507 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 80.0000 | 44.4444 | 96.7742 | 4 | 1 | 4 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |