PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47151-47200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8571 | 4 | 0 | 23 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 88.5714 | 4 | 0 | 15 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.7941 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1707 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2036 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | * | 76.9231 | 100.0000 | 62.5000 | 96.4912 | 4 | 0 | 5 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | het | 88.8889 | 100.0000 | 80.0000 | 93.6709 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.4334 | 0.0000 | 0.0000 | 4 | 919 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 15.0943 | 8.5106 | 66.6667 | 66.6667 | 4 | 43 | 4 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | * | 87.4786 | 100.0000 | 77.7439 | 86.1311 | 4 | 0 | 255 | 73 | 32 | 43.8356 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | het | 83.1683 | 100.0000 | 71.1864 | 87.6634 | 4 | 0 | 168 | 68 | 30 | 44.1176 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 50.0000 | 57.1429 | 61.1111 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 20.5128 | 50.0000 | 12.9032 | 57.5342 | 4 | 4 | 4 | 27 | 26 | 96.2963 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 44.4444 | 30.7692 | 80.0000 | 37.5000 | 4 | 9 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2195 | 0.0000 | 0.0000 | 4 | 1818 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.2679 | 0.0000 | 0.0000 | 4 | 1489 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2381 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 98.3660 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 95.2381 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 63.6364 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.6861 | 0.0000 | 0.0000 | 4 | 579 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 89.2857 | 4 | 12 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 1.0526 | 0.0000 | 0.0000 | 4 | 376 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 66.6667 | 100.0000 | 99.7509 | 4 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | hetalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 4 | 12 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 98.6301 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 98.8764 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 99.0196 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 98.4733 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.5217 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 55.5556 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 61.5385 | 44.4444 | 100.0000 | 99.2157 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.8788 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.6048 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 55.5556 | 4 | 1 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | * | 91.6784 | 100.0000 | 84.6354 | 83.7632 | 4 | 0 | 325 | 59 | 49 | 83.0508 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | het | 98.2935 | 100.0000 | 96.6443 | 81.6953 | 4 | 0 | 144 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 49.2308 | 33.3333 | 94.1176 | 77.0270 | 4 | 8 | 16 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 91.3580 | 4 | 1 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 94.6809 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | hetalt | 22.2222 | 12.9032 | 80.0000 | 93.5897 | 4 | 27 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | decoy | * | 96.0000 | 100.0000 | 92.3077 | 99.7796 | 4 | 0 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.8641 | 4 | 3 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.9789 | 4 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.5745 | 66.6667 | 53.8462 | 93.8095 | 4 | 2 | 7 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 58.8235 | 44.4444 | 86.9565 | 97.3714 | 4 | 5 | 20 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.3117 | 4 | 4 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.4118 | 4 | 4 | 9 | 0 | 0 | ||