PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46801-46850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 68.2540 | 5 | 0 | 5 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3333 | 100.0000 | 71.4286 | 70.8333 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 68.2540 | 5 | 0 | 5 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | hetalt | 24.6914 | 15.1515 | 66.6667 | 99.0491 | 5 | 28 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | hetalt | 34.1880 | 21.7391 | 80.0000 | 99.4253 | 5 | 18 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | C6_15 | * | * | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | * | het | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.4082 | 11.6279 | 83.3333 | 78.5714 | 5 | 38 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 2.6042 | 100.0000 | 5 | 187 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 5 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | func_cds | homalt | 50.0000 | 33.3333 | 100.0000 | 0.0000 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.3038 | 55.5556 | 36.8421 | 58.6957 | 5 | 4 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | * | 61.5942 | 62.5000 | 60.7143 | 91.7889 | 5 | 3 | 17 | 11 | 8 | 72.7273 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7030 | 71.4286 | 18.7500 | 96.3218 | 5 | 2 | 3 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2830 | 5 | 1 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.2587 | 0.0000 | 0.0000 | 5 | 1928 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.2593 | 0.0000 | 0.0000 | 5 | 1923 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3032 | 0.0000 | 0.0000 | 5 | 1644 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2744 | 0.0000 | 0.0000 | 5 | 1817 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7170 | 2.5381 | 33.3333 | 92.1875 | 5 | 192 | 5 | 10 | 7 | 70.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 69.7674 | 83.3333 | 60.0000 | 98.9806 | 5 | 1 | 6 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.1905 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | segdup | * | 14.0845 | 8.6207 | 38.4615 | 94.9807 | 5 | 53 | 5 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | het | 20.0000 | 13.5135 | 38.4615 | 94.7581 | 5 | 32 | 5 | 8 | 4 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.7778 | 19.2308 | 50.0000 | 95.0739 | 5 | 21 | 5 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | het | 66.6667 | 62.5000 | 71.4286 | 82.9268 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | het | 62.5000 | 55.5556 | 71.4286 | 88.7097 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | het | 62.5000 | 55.5556 | 71.4286 | 89.7059 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | het | 62.5000 | 55.5556 | 71.4286 | 89.8551 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 90.3846 | 5 | 4 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 55.5556 | 0.0000 | 95.4545 | 5 | 4 | 0 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | homalt | 50.0000 | 41.6667 | 62.5000 | 87.6923 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 5 | 0 | 5 | 0 | 0 | ||