PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46551-46600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 55.5556 | 100.0000 | 89.7959 | 5 | 4 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 89.7959 | 5 | 4 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 96.1240 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 83.3333 | 5 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.0476 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.3221 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.5765 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.6971 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.9355 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 97.2067 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5055 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 71.4286 | 62.5000 | 83.3333 | 62.5000 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | segdup | het | 34.4828 | 20.8333 | 100.0000 | 91.2281 | 5 | 19 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 20.7254 | 14.2857 | 37.7358 | 50.4673 | 5 | 30 | 20 | 33 | 29 | 87.8788 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | homalt | 78.9474 | 83.3333 | 75.0000 | 87.8788 | 5 | 1 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 91.4286 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 92.8000 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.2174 | 71.4286 | 60.0000 | 94.8454 | 5 | 2 | 6 | 4 | 2 | 50.0000 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.2381 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.5000 | 62.5000 | 62.5000 | 94.8718 | 5 | 3 | 5 | 3 | 2 | 66.6667 | |
| anovak-vg | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 5 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 66.6667 | 55.5556 | 83.3333 | 94.7826 | 5 | 4 | 5 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5305 | 5 | 0 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | HG002complexvar | * | 63.2248 | 71.4286 | 56.7114 | 83.4812 | 5 | 2 | 169 | 129 | 19 | 14.7287 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | het | 55.6456 | 71.4286 | 45.5752 | 82.8658 | 5 | 2 | 103 | 123 | 15 | 12.1951 | |