PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46301-46350 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5709 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.0952 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 94.7917 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.2906 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.6631 | 5 | 2 | 5 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 86.0465 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.3392 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 2.0243 | 0.0000 | 0.0000 | 5 | 242 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 99.4808 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5297 | 0.0000 | 0.0000 | 5 | 939 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.6378 | 0.0000 | 0.0000 | 5 | 779 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | homalt | 71.4286 | 55.5556 | 100.0000 | 40.0000 | 5 | 4 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 6.0241 | 3.1056 | 100.0000 | 68.7500 | 5 | 156 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.9091 | 83.3333 | 100.0000 | 99.1678 | 5 | 1 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.3471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.7917 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.9495 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 1.4925 | 0.0000 | 0.0000 | 5 | 330 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 95.9350 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.0630 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.5035 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.6216 | 5 | 4 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | het | 62.5000 | 45.4545 | 100.0000 | 99.2690 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | * | 58.8235 | 41.6667 | 100.0000 | 72.2222 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.9231 | 62.5000 | 100.0000 | 78.2609 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.2406 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.7949 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | * | 32.2581 | 19.2308 | 100.0000 | 96.8354 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.8038 | 5 | 5 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.6464 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 58.8235 | 41.6667 | 100.0000 | 61.5385 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 93.2432 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | * | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | het | 83.3333 | 71.4286 | 100.0000 | 70.5882 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | hetalt | 52.6316 | 35.7143 | 100.0000 | 93.4211 | 5 | 9 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 43.4783 | 29.4118 | 83.3333 | 99.2780 | 5 | 12 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||