PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46251-46300 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8049 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.3541 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 90.0000 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 94.8454 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4100 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 96.2963 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 96.3351 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 97.0954 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 97.1429 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.1304 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 96.4072 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.9577 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.8947 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.0066 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8903 | 5 | 1 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.2394 | 5 | 1 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.2759 | 5 | 1 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 99.7121 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 83.3333 | 83.3333 | 90.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 88.6792 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5357 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.9495 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 96.9231 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.4887 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.4242 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.4359 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |