PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45551-45600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | HG002complexvar | hetalt | 0.0000 | 1.9355 | 0.0000 | 0.0000 | 6 | 304 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 0.6961 | 0.0000 | 0.0000 | 6 | 856 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | homalt | 38.7097 | 24.0000 | 100.0000 | 99.3555 | 6 | 19 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C1_5 | * | * | 60.0000 | 100.0000 | 6 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | * | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | * | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1651 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8276 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | * | 85.2929 | 85.7143 | 84.8757 | 79.2084 | 6 | 1 | 1605 | 286 | 106 | 37.0629 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | het | 82.2319 | 85.7143 | 79.0215 | 80.8462 | 6 | 1 | 1066 | 283 | 105 | 37.1025 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.3104 | 0.0000 | 0.0000 | 6 | 1927 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.3112 | 0.0000 | 0.0000 | 6 | 1922 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4637 | 0.0000 | 0.0000 | 6 | 1288 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3711 | 0.0000 | 0.0000 | 6 | 1611 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3639 | 0.0000 | 0.0000 | 6 | 1643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5116 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9667 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.4382 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.8102 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0443 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8087 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6835 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5309 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.1348 | 6 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 90.3226 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| anovak-vg | INDEL | * | decoy | * | 67.7419 | 60.0000 | 77.7778 | 99.9553 | 6 | 4 | 7 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | homalt | 22.5256 | 75.0000 | 13.2530 | 46.6809 | 6 | 2 | 33 | 216 | 158 | 73.1481 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 57.1429 | 46.1538 | 75.0000 | 33.3333 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.3066 | 6 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 6 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.8696 | 100.0000 | 43.7500 | 99.4686 | 6 | 0 | 7 | 9 | 6 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 6 | 14 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2149 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2623 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |